PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG022083t3

Common Name

TCM_022083

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

NF-YB

Protein Properties

Length: 234aa MW: 25412.8 Da PI: 9.0627

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG022083t3	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	178.6	5.8e-56	87	181	1	95
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 vreqdr+lPian+srimkk+lPan+ki+kdaketvqecvsefisf+tseasdkcq+ekrktingddllwa+atlGfedy++plk yl++yre Thecc1EG022083t3 87 VREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKNYLTRYREG 179 69*****************************************************************************************96 PP NF-YB 94 eg 95 ++ Thecc1EG022083t3 180 DT 181 65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.1E-53	82	193	IPR009072	Histone-fold
SuperFamily	SSF47113	3.57E-39	90	203	IPR009072	Histone-fold
Pfam	PF00808	3.0E-28	93	157	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	3.3E-20	121	139	No hit	No description
PROSITE pattern	PS00685	0	124	140	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	3.3E-20	140	158	No hit	No description
PRINTS	PR00615	3.3E-20	159	177	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MKRDERTVLI NLILSSQSSP LSSLLQRPIP SLSSPRNPIS LSPALFFVFS FFPPRVFAMA 60 DAPAAPAPVS PGGGSHESGE QSPRSNVREQ DRYLPIANIS RIMKKALPAN GKIAKDAKET 120 VQECVSEFIS FITSEASDKC QKEKRKTING DDLLWAMATL GFEDYIDPLK NYLTRYREGD 180 TKGSAKGGDA SAKKDVQPSP NPQLIHQGSF SQGVNYGNSQ SQAHLMVPMQ GTE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1n1j_A	2e-46	88	178	3	93	NF-YB
4awl_B	2e-46	88	178	4	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	2e-46	88	178	4	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY185541	2e-37	AY185541.1 Gossypium barbadense clone 1__10 putative CCAAT-binding transcription factor gene, partial cds.
GenBank	AY185542	2e-37	AY185542.1 Gossypium barbadense clone 2__10 putative CCAAT-binding transcription factor gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007027236.2	1e-118	PREDICTED: nuclear transcription factor Y subunit B-8 isoform X1
Swissprot	Q8VYK4	7e-85	NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBL	A0A061ERV2	1e-171	A0A061ERV2_THECC; Nuclear transcription factor Y subunit B-10 isoform 3
STRING	EOY07738	1e-148	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37060.3	9e-87	nuclear factor Y, subunit B8

Link Out ? help Back to Top
Phytozome	Thecc1EG022083t3
Entrez Gene	18597894

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]