PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG022113t1
Common NameTCM_022113
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family S1Fa-like
Protein Properties Length: 83aa    MW: 9052.81 Da    PI: 10.4756
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG022113t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA133.45.8e-421782570
              S1FA  5 kveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                      ++eakG+nPGlivllvv glllvflvgny+ly yaqk+lPPrkkkPvskkk+k+e+lkqGv++PGe
  Thecc1EG022113t1 17 ETEAKGFNPGLIVLLVVVGLLLVFLVGNYALYLYAQKSLPPRKKKPVSKKKMKKERLKQGVSAPGE 82
                      78***************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046892.5E-401882IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    Send to blast
MSAEFEIGDK GNKISYETEA KGFNPGLIVL LVVVGLLLVF LVGNYALYLY AQKSLPPRKK  60
KPVSKKKMKK ERLKQGVSAP GE*
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007027283.12e-51PREDICTED: DNA-binding protein S1FA
SwissprotQ7XLX62e-17S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBLA0A061ERY56e-50A0A061ERY5_THECC; S1FA-like DNA-binding protein
STRINGEOY077859e-51(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28232769
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]