PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG022197t1

Common Name

TCM_022197

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

TCP

Protein Properties

Length: 215aa MW: 23188.1 Da PI: 7.0543

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG022197t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	111.9	9.1e-35	48	116	8	73
TCP 8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa...sec 73 ++++hTkv+gR+RRvR++a+caar+F+L++eLG+ +d++tieWLl+qa+p+i+++tg+++ +a +c Thecc1EG022197t1 48 SKDRHTKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGSGTVPAaheISC 116 79********************************************************66555332333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.3E-29	48	113	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.853	48	102	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MGSEMALHKF STANHNHQNS NINSVVSDES TPKTQLALPT RKPVSSLSKD RHTKVNGRGR 60 RVRMPALCAA RIFQLTRELG HRSDGETIEW LLRQAEPSII AATGSGTVPA AHEISCPAGP 120 TMTSASPPSV SCQVHPVGVG SGSVVAGMYT MTAPPPNCRL DLCQPVGFQY SAVGRSGYQH 180 MPFTALLLQP TTAAEEVEER QRVEDEEEEI RHHE*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007027375.2	1e-158	PREDICTED: transcription factor TCP11
Swissprot	Q9SJK7	5e-44	TCP11_ARATH; Transcription factor TCP11
TrEMBL	A0A061ETZ0	1e-157	A0A061ETZ0_THECC; Proliferating cell nuclear antigen gene-controlling element binding factor, putative
STRING	EOY07877	1e-158	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15265	16	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37000.1	2e-46	TCP family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG022197t1
Entrez Gene	18597987

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]