PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG022397t1
Common NameTCM_022397
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family Trihelix
Protein Properties Length: 482aa    MW: 52882.4 Da    PI: 7.009
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG022397t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix57.82.8e-18103189186
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       +W++  + +L+ea+ e+ ++l+rg+l++ +We+v++++  r ++ ++s +qCk+k +nl+kryk ++++++++   ++s++p+f+++e
  Thecc1EG022397t1 103 EWSDAAIGCLLEAYMEKLTQLNRGNLRGRDWEDVAAAVseRCEKQSKSVEQCKNKVDNLKKRYKLERHRMSDG-GVTVSHWPWFKKME 189
                       5*************************************777778899*************************9.55667********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.9E-21101191No hitNo description
Gene3DG3DSA:3.40.1160.102.4E-73232474IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B33.435240475IPR015963Uridylate kinase, bacteria
SuperFamilySSF536335.5E-58241474IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042542.26E-124243475No hitNo description
PfamPF006963.7E-25244454IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0046939Biological Processnucleotide phosphorylation
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MASSVDDDFS LLDDHQTNHN HHHVLHHHHH PSYASIPAPP PDNHDAEDDS DSAFRGANFD  60
NNNNNVTSSD VRIEKRRDQE EINDGVLKRP KQSTTEYRKD REEWSDAAIG CLLEAYMEKL  120
TQLNRGNLRG RDWEDVAAAV SERCEKQSKS VEQCKNKVDN LKKRYKLERH RMSDGGVTVS  180
HWPWFKKMEE IVGNSLPVKA VPDEDKGGAS PGTAVRQSKR YASATPSSAG QIISMKSKSP  240
KWRRVVFKIS GAALACTGPH NIDPKVAMLI AREVAIACRL GVEVAIVVGG RNFFCGDTWV  300
SATGLDRSTA YQIGMMASVM NSILLQSSLE KMGVQTRVQT AFSVQEVAEP YSRQRAIRHL  360
EKGRVVIFGG IGAGTGNPLF STDTAAALRA SEIHAEAVLK GTNVDGVYDC HSQDNNATFE  420
HISFRELVSR GATAMDMMAL TFCEENGIPV VVFNLLQPGN ISKALCGDQV GTLIDQTGRI  480
S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A9e-612424749239Uridylate kinase
3ek5_B9e-612424749239Uridylate kinase
3ek5_C9e-612424749239Uridylate kinase
3ek5_D9e-612424749239Uridylate kinase
3ek5_E9e-612424749239Uridylate kinase
3ek5_F9e-612424749239Uridylate kinase
3ek6_A9e-612424749239Uridylate kinase
3ek6_B9e-612424749239Uridylate kinase
3ek6_C9e-612424749239Uridylate kinase
3ek6_D9e-612424749239Uridylate kinase
3ek6_E9e-612424749239Uridylate kinase
3ek6_F9e-612424749239Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007027580.20.0PREDICTED: uncharacterized protein LOC18598133
TrEMBLA0A061EUK40.0A0A061EUK4_THECC; Aspartate/glutamate/uridylate kinase family protein
STRINGEOY080820.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93052631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]