PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG022446t1
Common NameTCM_022446
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family HSF
Protein Properties Length: 477aa    MW: 53320.6 Da    PI: 4.6524
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG022446t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.82e-34601512102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k++++++d +l+ +isw  +g+sfvv+d+ ef++ +Lp+ Fkh+nf+SFvRQLn+YgF+k+++++         weF+++ F++g+++ll
  Thecc1EG022446t1  60 FLSKTFDLVDDTSLDPIISWGPTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLNTYGFRKIDTDK---------WEFANEAFQRGRRHLL 143
                       9****************************************************************999.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       ++i+r+ks
  Thecc1EG022446t1 144 KNIQRRKS 151
                       ******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.36E-3455149IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.7E-5856149IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.109.2E-3757149IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.3E-186083IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.3E-3060149IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.3E-1898110IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434099123IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.3E-18111123IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MNPEDEKRSP SSPPNPPQTL PFPSPLVELE TFSTSAPAEK EFIGVPRPLE ILQGNPVPPF  60
LSKTFDLVDD TSLDPIISWG PTGESFVVWD PLEFSRLILP RNFKHNNFSS FVRQLNTYGF  120
RKIDTDKWEF ANEAFQRGRR HLLKNIQRRK SPQSQQVGNY FGASTEAGRS GLEGEIERLR  180
KEKSVLMQEV VDLQQHHQGT ARNVEVVGQR LQAAEKRQKQ MVSFLVKLFQ NPAFLARLKQ  240
KKEQGEFGSP RMRRKFVRHQ QLELLNSEPP VEGQLVEYKP DWRNLAISSS APDSNPISVE  300
QSPDYLPEGL DGIDLGAECL PFQIDNEVVV SDELAVAHGY IRTSELVGEG TSALGSKDSH  360
IKGKNIIGSE QEVIPGYLVS FPEELVKHKS SSEFSSSIGE TVAKHEDIWS MGFDVTAGMS  420
SSSNELWGNL ESYDIPELGV TGELPDVWDL GFVQTAEDSG TDKWPIEESP FDNPET*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-235715417125Heat shock factor protein 1
5d5u_B2e-235714926129Heat shock factor protein 1
5d5v_B2e-235714926129Heat shock factor protein 1
5d5v_D2e-235714926129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1235243ARLKQKKEQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007027618.20.0PREDICTED: heat stress transcription factor A-3
TrEMBLA0A061ESV20.0A0A061ESV2_THECC; DNA binding protein, putative
STRINGEOY081200.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM109502529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.11e-111heat shock transcription factor A3
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]