PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG022462t1
Common NameTCM_022462
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 261aa    MW: 27838.4 Da    PI: 7.7489
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG022462t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.33.8e-1894144155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       + y+GVr++  +g+Wv+eIr+p+    +  r++lg+f tae+Aa a++ a+++l+g
  Thecc1EG022462t1  94 PVYRGVRRRT-SGKWVSEIREPR----KpNRIWLGTFPTAEMAAIAYDVAALALKG 144
                       68*****888.8*********94....478***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.8E-1194144IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-3095154IPR001471AP2/ERF domain
PROSITE profilePS5103222.97295152IPR001471AP2/ERF domain
SMARTSM003804.9E-3495158IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-2195154IPR016177DNA-binding domain
CDDcd000184.84E-3196154No hitNo description
PRINTSPR003672.3E-896107IPR001471AP2/ERF domain
PRINTSPR003672.3E-8118134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MTFILVTVKY ISYMTSNETI YLHIKKLTPK FPSTINGFSR PQLQTPNLRA ISLYQIQVTM  60
HYSKSNKSSR ANTSSSSGGS ASGAGASAAT GRHPVYRGVR RRTSGKWVSE IREPRKPNRI  120
WLGTFPTAEM AAIAYDVAAL ALKGQDAELN FPNSAASLPV PASTSPRDIQ AAATSAAAAL  180
GAANDALFGN EDNEARNSPV GPDKPTTVDE FVDEDLIFDM PNVLVNMAEG MLLSPPRLDI  240
APAPAPADDA GDAENLWKFP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1785154474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017976767.11e-142PREDICTED: ethylene-responsive transcription factor ERF024
SwissprotQ9SJR07e-55ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A061ETI70.0A0A061ETI7_THECC; Integrase-type DNA-binding superfamily protein
STRINGEOY081310.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64242546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.12e-42ERF family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]