PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG022481t1
Common NameTCM_022481
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 227aa    MW: 24698.6 Da    PI: 5.1612
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG022481t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2476.2e-155099155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                      + ykGVr+  ++g+Wv+e+r+p     +  r++lg+f ++ +Aa+a++aa+++l+g
  Thecc1EG022481t1 50 PVYKGVRR--RNGKWVSELREPI----KkSRIWLGTFSSPGMAARAYDAAALALKG 99
                      68****85..47*********72....35***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.1E-95099IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-2651109IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-1751109IPR016177DNA-binding domain
PROSITE profilePS5103219.46751107IPR001471AP2/ERF domain
SMARTSM003807.3E-3051113IPR001471AP2/ERF domain
CDDcd000182.65E-1652109No hitNo description
PRINTSPR003678.2E-75263IPR001471AP2/ERF domain
PRINTSPR003678.2E-789109IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MEEQSVLSSK SHITPCSSSQ PELGSSSGQV EAKTQKRKAG RKKFQETRHP VYKGVRRRNG  60
KWVSELREPI KKSRIWLGTF SSPGMAARAY DAAALALKGD SASLNFPESA NALPRARSSS  120
IRDIQYAAME AAEAFGDIAK TPSPSPSLSS SSSLPSPPLP SLENSSENVQ GSSEKLFLDE  180
EEVFNMPGIL DSMAEGLILT PPAMQKGYYN WDDDVDDYME FTLWGD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007027640.21e-164PREDICTED: dehydration-responsive element-binding protein 1F
TrEMBLA0A061EUS71e-164A0A061EUS7_THECC; Dehydration-responsive element-binding protein 1B, putative
STRINGEOY081421e-165(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35528187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.13e-39C-repeat/DRE binding factor 2
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]