PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG022676t1

Common Name

TCM_022676

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

NAC

Protein Properties

Length: 261aa MW: 29707.2 Da PI: 7.983

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG022676t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	145.1	3.8e-45	4	138	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 +ppGfrF Pt+eelv++yL++k+egk+ +++vi+ vdiy+++PwdLp+ ++++ ++w+fF++r++++a+g r++r t+sgyWka Thecc1EG022676t1 4 MPPGFRFYPTEEELVSFYLHNKLEGKRedlnRLMDRVIPVVDIYDFNPWDLPHfsvyLCHKDPEQWFFFIPRQESEARGGRPKRLTTSGYWKA 96 79***********************6653223347***********546653445667************************* PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 tg+ v+s++++ +g+k+t+vfy+grap+g+kt+W m+ey+ Thecc1EG022676t1 97 TGSPGYVYSSNSRPIGVKRTMVFYNGRAPSGKKTEWKMNEYK 138 ***************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.79E-49	3	166	IPR003441	NAC domain
PROSITE profile	PS51005	49.448	4	166	IPR003441	NAC domain
Pfam	PF02365	4.3E-23	5	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MEDMPPGFRF YPTEEELVSF YLHNKLEGKR EDLNRLMDRV IPVVDIYDFN PWDLPHFSVY 60 LCHKDPEQWF FFIPRQESEA RGGRPKRLTT SGYWKATGSP GYVYSSNSRP IGVKRTMVFY 120 NGRAPSGKKT EWKMNEYKAI EGEASSPNAA PPTLRQEFSL CRVYKKSKCL RSFDRRPPPG 180 VKIGEAVPRH GNGFGVGKSD HQGTEIADRT TIASSPESSS SGDNHHANRP NQTRESNSSR 240 MVVDDECSFW DLDGFWDPVN *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-35	4	166	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-35	4	166	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-35	4	166	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-35	4	166	17	165	NO APICAL MERISTEM PROTEIN
4dul_A	1e-35	4	166	17	165	NAC domain-containing protein 19
4dul_B	1e-35	4	166	17	165	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007027830.2	0.0	PREDICTED: NAC domain-containing protein 90
Swissprot	Q9FMR3	9e-70	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A061EV89	0.0	A0A061EV89_THECC; NAC domain containing protein 90
STRING	EOY08332	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10159	10	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	1e-71	NAC domain containing protein 90

Link Out ? help Back to Top
Phytozome	Thecc1EG022676t1
Entrez Gene	18598295

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]