PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG023006t1
Common NameTCM_023006
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family M-type_MADS
Protein Properties Length: 355aa    MW: 38815.2 Da    PI: 9.5089
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG023006t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.61.9e-141152344
                      --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
            SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                      i n+s r+ ++ kRr g+lKK +EL +LC+++++vii s++ 
  Thecc1EG023006t1 11 IVNDSARKASLKKRRLGLLKKVNELTTLCGVNACVIICSPDE 52
                      779************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.6149IPR002100Transcription factor, MADS-box
SMARTSM004321.9E-20160IPR002100Transcription factor, MADS-box
CDDcd002662.33E-27285No hitNo description
PRINTSPR004041.6E-5323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.01E-21394IPR002100Transcription factor, MADS-box
PfamPF003194.3E-141152IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-52338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MARKKVKLAW IVNDSARKAS LKKRRLGLLK KVNELTTLCG VNACVIICSP DETEPVVWPS  60
QDVVQQQLVR FQSMPELERQ KKMMNQETYL REKVTKEQEQ LTKCQRRNKE IQMTHFMHQI  120
NQGKGLNELN LSELLGLTWF VEEKIKEIRK RIEFFQQVSF APAGAPHHPH LPFPPQGPAV  180
NETARIGSGS ACHGGDGRTS TEPLLWDQWF IDMMNQNELK SAGSSSIRSD MGLPYHPLAG  240
IAADDPGLPR HSFAAGSSGS AYMGLPHMSS RHQGAGAIDM GLSCGRSVSG SSFGPFRIDT  300
GLGLHPSGGE VGSSSARSKL GLPPLRRFEG SSSGVGSDNG LPFDGKTWPN NFSP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAWIVNDSARKASLKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007028008.20.0PREDICTED: agamous-like MADS-box protein AGL28
TrEMBLA0A061ETW60.0A0A061ETW6_THECC; AGAMOUS-like 48, putative
STRINGEOY085100.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.13e-27AGAMOUS-like 80
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]