PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG023041t1
Common NameTCM_023041
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family M-type_MADS
Protein Properties Length: 355aa    MW: 38451.4 Da    PI: 9.1552
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG023041t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.91.7e-151152344
                      --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
            SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                      i n+s r  ++ kRr g+lKK +EL +LC+++++vii+s++ 
  Thecc1EG023041t1 11 IANDSARRASLKKRRLGLLKKVSELTTLCGVDACVIIYSPDK 52
                      89*************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.385149IPR002100Transcription factor, MADS-box
SMARTSM004328.5E-21160IPR002100Transcription factor, MADS-box
CDDcd002664.53E-30285No hitNo description
SuperFamilySSF554553.4E-23394IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-5323IPR002100Transcription factor, MADS-box
PfamPF003197.9E-161152IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-52338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MARRKVKLAW IANDSARRAS LKKRRLGLLK KVSELTTLCG VDACVIIYSP DKTEPVVWPS  60
HDVMQQQLAR FQSMPESERQ KKMTNQDTYL REKVTKAQEQ LTQCQRRNKE VEMTHLMHQI  120
NQGKELDELN LSELHGLIWF VEEKINQIRK RIEFFLQVPF APAGAPYHPH LPLPPQGPAV  180
NETARIGSGS AGHGGDGRTH TEPSLWDQWL IDMMNHNEHK SAGSSRIRSD VGLPYHPFAG  240
SAADDPGMPG HSFAGSSSGA AHTGLPPMSF RQQGAGASDM GLSRASSIGG SGFGPLGSDI  300
GLGLHPLSGD VRRSSAGSEL GLPHFRSLGG SSSGAGSDIG LPFDGKTWPN NFSP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RRKVKLAWIANDSARRASLKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017976416.10.0PREDICTED: MADS-box transcription factor PHERES 1
TrEMBLA0A061ETX20.0A0A061ETX2_THECC; AGAMOUS-like 48, putative
STRINGEOY085150.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-33AGAMOUS-like 80
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]