PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG024315t1

Common Name

TCM_024315

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bHLH

Protein Properties

Length: 234aa MW: 26897.7 Da PI: 7.4606

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG024315t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.1	3.7e-14	63	115	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ +hn+rEr RR++iNs + Lr+llP + ++ k+ls ++ ++ +YI +Lq Thecc1EG024315t1 63 KKLNHNARERDRRKKINSLYTSLRSLLPLS--EQTKRLSIPATISRVLKYIPELQ 115 6789***********************7..36666*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.456	62	114	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.67E-15	63	134	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.7E-11	63	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.30E-12	63	119	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.2E-12	63	134	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.9E-9	68	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010106	Biological Process	cellular response to iron ion starvation
GO:0055072	Biological Process	iron ion homeostasis
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MCALTPFPVC EWPLDSPINH IEQISYTEIF EDLLRFTSTL PPIQLDRSPS CSGDSGNNPI 60 VLKKLNHNAR ERDRRKKINS LYTSLRSLLP LSEQTKRLSI PATISRVLKY IPELQAHVER 120 LVQKKEEILS RQEEFSCDQE NKRKGSSSFA ISVSRVSERE VVVQISTFRA FETPLSHVLF 180 NLEEDGLFLT EASCFESFGG RVFYNLHFQV ERTYNLEGVV LNEKLLSLYE KRK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007028476.1	1e-170	PREDICTED: transcription factor ORG2 isoform X1
TrEMBL	A0A061EWD9	1e-169	A0A061EWD9_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1
STRING	EOY08978	1e-169	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM482	28	153

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56970.1	2e-48	bHLH family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG024315t1
Entrez Gene	18598752

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]