PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG024565t1
Common NameTCM_024565
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family HSF
Protein Properties Length: 234aa    MW: 26764.2 Da    PI: 8.3081
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG024565t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.91.9e-34241152102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+y ++ed+ ++++isw+++g+ fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+kv +++         weF ++ F+kg++ell
  Thecc1EG024565t1  24 FLMKTYMLVEDPITDDVISWNADGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSR---------WEFCNEMFRKGDRELL 107
                       9****************************************************************999.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       ++i+r+k 
  Thecc1EG024565t1 108 CNIRRRKA 115
                       *****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.1E-5420113IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.3E-3620113IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.72E-3320113IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.2E-182447IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.3E-3124113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-186274IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406387IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-187587IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MESMASDSNK GLLDYVRKST PPPFLMKTYM LVEDPITDDV ISWNADGTGF VVWQPAEFAR  60
DLLPTLFKHS NFSSFVRQLN TYGFRKVATS RWEFCNEMFR KGDRELLCNI RRRKAWANKQ  120
QTAATIQVSP QDSDEDQKSS STSSSSGHNS LVDENKRLKK ENGVLSLELT SMKRKCKELL  180
DLVAKYAQFE EEKEDESPKL FGVRLEVEGE RERKRRRAEI SESASILLSQ SCK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-211911315120Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1212216RKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007028662.21e-172PREDICTED: heat stress transcription factor B-3
SwissprotO222304e-75HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A061F3V01e-172A0A061F3V0_THECC; Heat shock factor protein, putative
STRINGEOY091641e-173(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108142731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.12e-67heat shock transcription factor B3
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]