PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG024823t1
Common NameTCM_024823
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family AP2
Protein Properties Length: 828aa    MW: 93203.8 Da    PI: 4.4049
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG024823t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.47.2e-13256312156
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                       s y+GV++++++ r++A ++d s++ ++ k++++g ++ +e Aa+a++ a++kl+ge
  Thecc1EG024823t1 256 STYRGVSRCRYTDRYEAFLWDNSDRSQKpKTVYIGGYDDEESAARAYDIAALKLWGE 312
                       56*******************66655568*************************997 PP
2AP245.71.6e-14354405155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV++++  ++W A+I       k  k ++lg+f+t+eeAa+a++ a+ +l+g
  Thecc1EG024823t1 354 SIYRGVSRNSDFKKWQARIGKG----KEiKGIYLGTFDTEEEAARAYDVAAIRLKG 405
                       57****************9993....247************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.06E-14256319No hitNo description
SuperFamilySSF541719.15E-14256320IPR016177DNA-binding domain
PROSITE profilePS5103216.529257319IPR001471AP2/ERF domain
SMARTSM003801.1E-14257325IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-12257320IPR001471AP2/ERF domain
PfamPF008473.1E-8258312IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-16354414IPR016177DNA-binding domain
CDDcd000181.87E-19354415No hitNo description
PfamPF008472.1E-9354405IPR001471AP2/ERF domain
SMARTSM003801.8E-21355419IPR001471AP2/ERF domain
PROSITE profilePS5103217.425355413IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-17355413IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 828 aa     Download sequence    Send to blast
MEELSTLNFV INSIEARLQA KETELKSCGT DEQVADILFC LCMSIDFSSK DFTSFNHLWT  60
IFSSINMSSP NFDGSPCLPF SPMSSPHPTQ LAPQLEDSNT IFMNGTLDNL FQNHSLFPMA  120
QPNYSPDAHQ SFGFLSNFLQ VNQTAASLPE YPLQNETSLL LQNSPEFPYN MSQGITNSFM  180
EQNAEEMICG SDEASNKSST VKRKQRNTSK NKKQTVETSV KDNSSQSSGG SNETTSNKCR  240
KRRQRRQERV FGVRSSTYRG VSRCRYTDRY EAFLWDNSDR SQKPKTVYIG GYDDEESAAR  300
AYDIAALKLW GESAPLNFPM CNYEKDLEEM QFYTKNEYFR SLRRKSRGFA KGASIYRGVS  360
RNSDFKKWQA RIGKGKEIKG IYLGTFDTEE EAARAYDVAA IRLKGDNAIT NFDINEYDLT  420
SILQSTKLPI GKGASKLLLE SSMDDVIRKK RNCTNEQIAL VHFEEDDSGS PDPNLVSMHP  480
QQFQNLLAPE DPNMEHQQNL NHSNQQDLNQ ILNSSLLHGF QNLDELRANP TLLQGFNCFG  540
GDMSNDENLS FNFDVEFPSN VDLDGYLTIL EAGEKYNGGL ERGIQEMQPF EFPQDITAPE  600
NLQFTNQVLH QNPSFNFMQG YDQNPTFPIL QGYQNPVELR ENLAGTGWRN RLETATEFNG  660
NYNGGTFPIE GIMEGCSAVG SAYDNFSTEL SGEVQQMQLR ENLQSLLALQ GQDSHNLNQG  720
HEDVTTQNLY QEPINFQTNP SSDYLFSGNY NEEVSCNGIF EGLPRVMEIK NNSTGDHDDN  780
FWDSRAALVE NPVPGTAGNG VNFFEDIEED FLSSCLQALN ELGPLSF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1240245KRRQRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021281871.10.0LOW QUALITY PROTEIN: AP2-like ethylene-responsive transcription factor PLT2
TrEMBLA0A061EWC70.0A0A061EWC7_THECC; Integrase-type DNA-binding superfamily protein
STRINGEOY093950.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17569610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.15e-81AP2 family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]