PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG024873t1
Common NameTCM_024873
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family SBP
Protein Properties Length: 389aa    MW: 40816 Da    PI: 9.6321
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG024873t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP138.81.6e-4389164176
                       --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
               SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                       +CqvegC++dls+ak y++rhkvC +hsk+p+v+v+gleqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+
  Thecc1EG024873t1  89 RCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPKVIVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKP 164
                       6*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.8E-3583151IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.50587164IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.4E-4188168IPR004333Transcription factor, SBP-box
PfamPF031101.0E-3290163IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MEMGSGSLTE SGGSSTNSST ESLNGLKFGK KIYFEDAAAG APAAAAAASA AGGGAVGTPP  60
KSGPGSSSLS GSGRKARGGG VVQGAQPPRC QVEGCKVDLS DAKAYYSRHK VCGMHSKSPK  120
VIVAGLEQRF CQQCSRFHQL PEFDQGKRSC RRRLAGHNER RRKPPPGSLL PSRYGRLSSS  180
IVESSRGGSF IMDFTAYPRL SGRDAWPTAR SSERVPGNQN TATGRSLPHP WQNNSENPPH  240
DLFLQGSPGG TGLSSAGIPS GECFTGVADS SCALSLLSNQ PWGSRNRASS LGVNDMMNTE  300
GSSVAQPTTP NGATVNPYSN ASWGFKGNDS GSSSHELPPH LGLGQISEPV NNQFSGGLDL  360
SQQSRRQFME LEQSRGYDTS TQHIHWSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A9e-32901631184squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017977243.10.0PREDICTED: squamosa promoter-binding-like protein 9
TrEMBLA0A061EXC50.0A0A061EXC5_THECC; Promoter-binding protein SPL9
STRINGEOY094560.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21442775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.14e-68squamosa promoter binding protein-like 9
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]