PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG025083t1
Common NameTCM_025083
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 116aa    MW: 12674.8 Da    PI: 10.006
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG025083t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.88.6e-162776355
               AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      y+GV+++++rgrW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Thecc1EG025083t1 27 YRGVTRHHQRGRWQASIGRVAG---NKDLYLGTFSTREEAAEAYDIAAVKFRG 76
                      9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.38E-152578IPR016177DNA-binding domain
CDDcd000181.23E-182578No hitNo description
SMARTSM003804.2E-202687IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-162679IPR001471AP2/ERF domain
PROSITE profilePS5103217.0292687IPR001471AP2/ERF domain
PfamPF008473.9E-102776IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MKNMSRQDHV AHLRRKSSGF SRGASMYRGV TRHHQRGRWQ ASIGRVAGNK DLYLGTFSTR  60
EEAAEAYDIA AVKFRGSRNK EMDSNNEASD CNTPALTNGE TLQPEVNNGN GSDGS*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022721716.13e-59AP2-like ethylene-responsive transcription factor ANT
SwissprotQ84Z025e-42CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A061EY452e-80A0A061EY45_THECC; Integrase-type DNA-binding superfamily protein
STRINGEOY096913e-81(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31372863
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.17e-44AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]
  3. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]