PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG025205t1

Common Name

TCM_025205

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

HB-other

Protein Properties

Length: 162aa MW: 18627.1 Da PI: 8.2425

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG025205t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.2	1.9e-20	28	79	5	56
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++++q+++Le++F+++ +p++++r+eL+k+lgL+ +q+k+WFqN+R++ k Thecc1EG025205t1 28 HRHSTHQIQTLEAFFKECAHPDENQRRELSKELGLEPKQIKFWFQNKRTQTK 79 5789********************************************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.6E-20	9	75	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.43E-19	11	81	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.082	21	81	IPR001356	Homeobox domain
SMART	SM00389	2.8E-16	23	85	IPR001356	Homeobox domain
CDD	cd00086	9.29E-16	25	79	No hit	No description
Pfam	PF00046	8.5E-18	28	79	IPR001356	Homeobox domain
PRINTS	PR00031	2.4E-5	52	61	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	56	79	IPR017970	Homeobox, conserved site
PRINTS	PR00031	2.4E-5	61	77	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MDIARGNIGS SDDEHKASTC HEKGRIYHRH STHQIQTLEA FFKECAHPDE NQRRELSKEL 60 GLEPKQIKFW FQNKRTQTKA RKERAENSIL RASKESLLYE NTAMREALAK MVCVCCGSPL 120 LPEPQAGHGL HQLELENTQL KQGLEKLTKF LANYINMHDH Y*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021283424.1	1e-108	homeobox-leucine zipper protein ROC8-like
Swissprot	Q69T58	2e-43	ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBL	A0A061F5M8	1e-117	A0A061F5M8_THECC; Homeodomain GLABROUS 8, putative
STRING	EOY09829	1e-118	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM491	28	149

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03260.1	2e-41	homeodomain GLABROUS 8

Link Out ? help Back to Top
Phytozome	Thecc1EG025205t1
Entrez Gene	18599336

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]