PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG025441t1

Common Name

TCM_025441

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

NAC

Protein Properties

Length: 136aa MW: 15555.7 Da PI: 7.9443

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG025441t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	67.5	3.8e-21	27	101	53	128
NAM 53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + +e yfF+ ++y+t ++ + +tksgyWkatg+++++ + ++e vg k+++vfy g+ap++++++W+m+e+++ Thecc1EG025441t1 27 RKANEAYFFTIVPQAYSTAEQMEGSTKSGYWKATGETEQIDH-HNEIVGFKRIFVFYCGEAPTAKESSWMMNEFSV 101 256799********************************99.999**************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	20.191	1	126	IPR003441	NAC domain
SuperFamily	SSF101941	4.97E-20	26	106	IPR003441	NAC domain
Pfam	PF02365	1.9E-9	31	100	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 136 aa Download sequence Send to blast
MSCRWKMLNN LNSTRHNDIA CNFTKLRKAN EAYFFTIVPQ AYSTAEQMEG STKSGYWKAT 60 GETEQIDHHN EIVGFKRIFV FYCGEAPTAK ESSWMMNEFS VNPSLVQDNE LDLRTNVTKF 120 CIAYVKLGPI FAYRA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021281939.1	1e-56	NAC domain-containing protein 59-like
TrEMBL	A0A061EZ34	1e-98	A0A061EZ34_THECC; Uncharacterized protein
STRING	EOY10056	2e-99	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17601	7	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10480.1	7e-16	NAC domain containing protein 50

Link Out ? help Back to Top
Phytozome	Thecc1EG025441t1
Entrez Gene	18599496

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]