PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG025488t1
Common NameTCM_025488
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 378aa    MW: 42239.5 Da    PI: 6.6754
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG025488t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.53.7e-193481148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd +lvd+++++G g+W++ ++  g++R++k+c++rw +yl
  Thecc1EG025488t1 34 KGPWTPEEDSILVDYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 81
                      79********************************************97 PP
2Myb_DNA-binding569.2e-1887132148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg++++eE++ ++++++ lG++ W++Ia +++ gRt++++k++w+++l
  Thecc1EG025488t1  87 RGKFSEEEEQTIINLHAVLGNK-WSAIATHLP-GRTDNEIKNFWNTHL 132
                       89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.5E-262584IPR009057Homeodomain-like
PROSITE profilePS5129418.0712981IPR017930Myb domain
SuperFamilySSF466898.24E-3231128IPR009057Homeodomain-like
SMARTSM007172.0E-153383IPR001005SANT/Myb domain
PfamPF002492.4E-173481IPR001005SANT/Myb domain
CDDcd001674.95E-123681No hitNo description
PROSITE profilePS5129427.57982136IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.1E-2885136IPR009057Homeodomain-like
SMARTSM007175.9E-1786134IPR001005SANT/Myb domain
PfamPF002491.0E-1687132IPR001005SANT/Myb domain
CDDcd001671.18E-1289132No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MPSIHTNISQ TTLIKGHWDM MGRSPCCDEN GLKKGPWTPE EDSILVDYIQ KHGHGSWRAL  60
PKLAGLNRCG KSCRLRWTNY LRPDIKRGKF SEEEEQTIIN LHAVLGNKWS AIATHLPGRT  120
DNEIKNFWNT HLKKKLLQMG IDPVTHRPRT DLNILANLPQ LLAAANFSSL MNIPLDNALR  180
LQSDAAQLAK IQLLHNILQV LGSSSSTTTP TMEAMNLLAG PSLRENQLYE LLRMNSQLEE  240
NRNLPFAFAP HELTQLQSNF LNLEASQHQP HQFSEYHQPM KDSKICSNNN DQFASSSSSP  300
VIPTSTPQLP ALVPASPGHP TTHVNQTENK INPNDISNPS STSTTFEAWG DLMDDEASDS  360
YWRDIIDQAS SQSWTIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28321365108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017976662.10.0PREDICTED: transcription factor MYB39
SwissprotQ9S9Z22e-95MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A061EYD80.0A0A061EYD8_THECC; Myb domain protein 107
STRINGEOY101100.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.21e-110myb domain protein 9
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]