PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG025561t1
Common NameTCM_025561
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family GRF
Protein Properties Length: 349aa    MW: 37942.8 Da    PI: 7.6616
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG025561t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.46.9e-25104148145
               WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                       d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+
  Thecc1EG025561t1 104 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVES 148
                       79****************************************986 PP
2QLQ63.45.9e-223672137
               QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                      s+FT +Q+q+L++Q+l++Ky++a++PvP++L+++iqk
  Thecc1EG025561t1 36 SPFTVSQWQELEHQALIFKYMMAGLPVPHDLVLPIQK 72
                      89*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.6E-123672IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.913772IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.2E-153771IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.762104148IPR014977WRC domain
PfamPF088794.1E-21105147IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MNNGGGGGGG GGGGGAGSGG GGGMGTGGGM MAMRSSPFTV SQWQELEHQA LIFKYMMAGL  60
PVPHDLVLPI QKSFESISHR FFHHPTIECD FAVGYCSFYG KKVDPEPGRC RRTDGKKWRC  120
SKDAYPDSKY CERHMHRGRN RSRKPVESQT MTQSSSTVTS LTVSGSSGGT GSFQNLPLHA  180
FGSTQGTASG TSQSHYHMES IPYGIPSKDY RYLQGLKPEV GEHSFFSEAS GSNRSLQIET  240
QLDNTWPLMQ SRVSSYPQSK SSGNPILQND CPQHSFFSNE FNSGEPVKHE GQSLRPFFDE  300
WPKPRDSWSA LEDERSNQTS FSTTQLSISI PMASSDFSTT SSRSPHDS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3824882e-69FQ382488.1 Vitis vinifera clone SS0ABG55YD19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017977790.10.0PREDICTED: growth-regulating factor 4
SwissprotQ6AWY61e-89GRF3_ORYSJ; Growth-regulating factor 3
TrEMBLA0A061EZZ60.0A0A061EZZ6_THECC; Growth-regulating factor 5
STRINGEOY102030.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM143391019
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.13e-41growth-regulating factor 5
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]