PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG025849t1
Common NameTCM_025849
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family LBD
Protein Properties Length: 237aa    MW: 25699.9 Da    PI: 6.7776
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG025849t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.11.7e-39421431101
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                       +C aCk+lrrkC ++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar++dPvyG+v++il+lqqq+++l+a
  Thecc1EG025849t1  42 PCGACKFLRRKCISGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPVNRRHDAVVTISYEAQARLSDPVYGCVSTILSLQQQVASLQA 134
                       7***********************9989***************************************************************** PP

            DUF260  93 elallkeel 101
                       ela+++++l
  Thecc1EG025849t1 135 ELAMVQNQL 143
                       *****9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.94241143IPR004883Lateral organ boundaries, LOB
PfamPF031959.3E-3942140IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MAEPQCHGMS ETRRKGTSKH ATMLVEADEP VVAAPAPVPA APCGACKFLR RKCISGCIFA  60
PHFGSDQGAA RFAAVHKVFG ASNVSKLLLH IPVNRRHDAV VTISYEAQAR LSDPVYGCVS  120
TILSLQQQVA SLQAELAMVQ NQLINSRFAM ANALQSSQQQ QQQQQQHIGL LQPAYSNNSS  180
ASNSLIHMSN FTSSFDLVAE TAPSSQSLDR LDQLSRPCHD DEDDEEESRI PAIFRQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-37331491115LOB family transfactor Ramosa2.1
5ly0_B3e-37331491115LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007030005.11e-174PREDICTED: LOB domain-containing protein 20
SwissprotQ9SRV38e-78LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A061F1E51e-173A0A061F1E5_THECC; LOB domain-containing protein 20
STRINGEOY105071e-174(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.15e-61LOB domain-containing protein 20
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]