PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG026121t1
Common NameTCM_026121
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 214aa    MW: 23634.7 Da    PI: 9.2057
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG026121t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.71.9e-154291255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                       y+GVr++  +g+WvAeIr+p   + r  r ++g+f t  +A  a+++ ++kl+g
  Thecc1EG026121t1 42 TYRGVRQRT-WGKWVAEIREP---N-RgNRLWIGTFSTSLDAVLAYDEVARKLYG 91
                      69****999.**********8...2.359************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.37E-244199No hitNo description
Gene3DG3DSA:3.30.730.103.0E-2742100IPR001471AP2/ERF domain
PROSITE profilePS5103219.9814299IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-184299IPR016177DNA-binding domain
SMARTSM003802.8E-2642105IPR001471AP2/ERF domain
PfamPF008476.5E-104291IPR001471AP2/ERF domain
PRINTSPR003673.6E-84354IPR001471AP2/ERF domain
PRINTSPR003673.6E-86581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MEAEAKANCT KKVVISKRPS SLGKSRKGCK RGKGGPENAM CTYRGVRQRT WGKWVAEIRE  60
PNRGNRLWIG TFSTSLDAVL AYDEVARKLY GPSAKLNLPQ PRDFPSITSF PGNLVNSCKE  120
TGMLGSPAVG ESSGSSGSSI QSEERLVRRK ISTEGFKGSV FLGNDGEEDF YWPEFSLEND  180
FLKMNDIEVL MGQEFKGNWN GNEIAGIQSQ WFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-154399360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007030307.21e-154PREDICTED: dehydration-responsive element-binding protein 2D
TrEMBLA0A061F8H61e-154A0A061F8H6_THECC; Integrase-type DNA-binding superfamily protein, putative
STRINGEOY108091e-155(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2243945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.13e-36ERF family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]