PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG026144t1

Common Name

TCM_026144

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

ZF-HD

Protein Properties

Length: 177aa MW: 20864.8 Da PI: 9.9894

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG026144t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	85.4	6e-27	74	131	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 +++Yk+C++NhA +lG ++vDGCgEf+p+ ++ + l C ACgCHRnFHR+e ++ Thecc1EG026144t1 74 NIKYKDCMRNHAPQLGVNVVDGCGEFTPKGRTSeTRNGNLDCEACGCHRNFHRKEATK 131 689***********************96665588999*************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	2.2E-23	75	129	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	3.0E-13	75	138	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	5.0E-23	76	128	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	21.268	77	128	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016021	Cellular Component	integral component of membrane

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MQRIETMRQV EAYNYKAKRL PKHLDKGNQN LAFVSLYTFS FSTTFSLFMA NNFLERKPFK 60 PPFEIIERKT KTINIKYKDC MRNHAPQLGV NVVDGCGEFT PKGRTSETRN GNLDCEACGC 120 HRNFHRKEAT KKISLTFIEN EQVNWFRFHS RPFEMNNEQK QTENEEMNER IKKPKN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022719697.1	1e-51	mini zinc finger protein 1-like
TrEMBL	A0A061F2D1	1e-129	A0A061F2D1_THECC; Uncharacterized protein
STRING	EOY10852	1e-129	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22155	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60480.1	1e-18	homeobox protein 26

Link Out ? help Back to Top
Phytozome	Thecc1EG026144t1
Entrez Gene	18600038

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]