PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG026197t1
Common NameTCM_026197
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 233aa    MW: 26183.8 Da    PI: 9.5082
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG026197t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.9e-171461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd +l+ +++++G g+W++ ++  g+ R++k+c++rw +yl
  Thecc1EG026197t1 14 KGPWTPEEDRILISYIQRHGHGNWRALPKQAGLPRCGKSCRLRWINYL 61
                      79******************************99************97 PP
2Myb_DNA-binding52.61e-1667111147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg++T eE+e + ++++ lG++ W++Ia++++ gRt++++k++w+ +
  Thecc1EG026197t1  67 RGNFTSEEQETIFKLHQVLGNR-WSAIAARLP-GRTDNEIKNYWHGH 111
                       89********************.*********.***********966 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.3E-27564IPR009057Homeodomain-like
PROSITE profilePS5129417.769961IPR017930Myb domain
SuperFamilySSF466893.88E-3210108IPR009057Homeodomain-like
SMARTSM007175.8E-151363IPR001005SANT/Myb domain
PfamPF002493.1E-161461IPR001005SANT/Myb domain
CDDcd001672.66E-121661No hitNo description
PROSITE profilePS5129425.79862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-2665117IPR009057Homeodomain-like
SMARTSM007172.0E-1566114IPR001005SANT/Myb domain
PfamPF002499.7E-1567111IPR001005SANT/Myb domain
CDDcd001674.51E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MARAPCCEKM GMKKGPWTPE EDRILISYIQ RHGHGNWRAL PKQAGLPRCG KSCRLRWINY  60
LRPDIKRGNF TSEEQETIFK LHQVLGNRWS AIAARLPGRT DNEIKNYWHG HLKKKLKQAA  120
AGSMDCKAIM EARIALHHQR DQSPGLMKPS ISSQHSPEPT CSTSTPKPDT EELALTGEQH  180
GAVQESAGVQ FPFSHVSMVE TMKNNGPNVD GNRDFWYKLF MENSNEAHGN LG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29121165108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111117LKKKLKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007030431.21e-176PREDICTED: myb-related protein Myb4
SwissprotQ7XBH45e-73MYB4_ORYSJ; Transcription factor MYB4
TrEMBLA0A061F1Y51e-175A0A061F1Y5_THECC; Myb domain protein 15, putative
STRINGEOY109331e-176(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.12e-72myb domain protein 15
Publications ? help Back to Top
  1. Park MR, et al.
    Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development.
    Plant Cell Environ., 2010. 33(12): p. 2209-30
    [PMID:20807373]
  2. Soltész A, et al.
    The rice Osmyb4 gene enhances tolerance to frost and improves germination under unfavourable conditions in transgenic barley plants.
    J. Appl. Genet., 2012. 53(2): p. 133-43
    [PMID:22246661]
  3. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]