PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG026234t1
Common NameTCM_026234
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 315aa    MW: 35238.9 Da    PI: 4.8544
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG026234t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.93e-1993142355
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr ++ +g+++AeIrd + ng   r++lg+f+tae Aa a+++a+++++g
  Thecc1EG026234t1  93 YRGVRKRP-WGKYAAEIRDSTRNG--VRVWLGTFDTAEAAALAYDQAALAMRG 142
                       9*******.**********44465..*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.4E-3192151IPR001471AP2/ERF domain
SMARTSM003803.6E-3792156IPR001471AP2/ERF domain
PROSITE profilePS5103223.23592150IPR001471AP2/ERF domain
CDDcd000181.42E-1893150No hitNo description
SuperFamilySSF541711.31E-2293151IPR016177DNA-binding domain
PfamPF008471.4E-1393142IPR001471AP2/ERF domain
PRINTSPR003671.3E-1093104IPR001471AP2/ERF domain
PRINTSPR003671.3E-10116132IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MDSSFFQYPN LQFSPAQSSS SYVSQENFSP EYFNYQNQAL PFNENDSQEM LLLGVLNQAP  60
ANYFDTTSVN SFGDDNEVNS QANEKGTGKE ISYRGVRKRP WGKYAAEIRD STRNGVRVWL  120
GTFDTAEAAA LAYDQAALAM RGPMAILNFP MDKVYESLQE MNYGFEEGYS PVLTMKKRYS  180
MMAKRSGSKK KKEKEMVMEN ILVLEDLGAD YLEELLSISE SSATPYWLEP ALMINIQELS  240
RIDVVHSDTL SVSSKVKQAL STLDWALRCG TMRPPKVAAS AKWASPCLLN DIIKLTQDRL  300
KISSDLAAMA HLLI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-2785152674Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1175191KKRYSMMAKRSGSKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021282853.10.0LOW QUALITY PROTEIN: ethylene-responsive transcription factor 1B-like
TrEMBLA0A061F8X70.0A0A061F8X7_THECC; Ethylene-responsive transcription factor
STRINGEOY109640.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22752876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.13e-42ethylene response factor 1
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]