PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG026629t1

Common Name

TCM_026629

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

NF-YB

Protein Properties

Length: 145aa MW: 15978.7 Da PI: 4.5343

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG026629t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	159.2	6.4e-50	3	98	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 eqd++lPianv+rimk++lP ak+sk+ak+t+qec++ef+sfvt+easdkc++e+rkt+ngdd++wal+ lGf++y+e++ yl+kyre+e+e Thecc1EG026629t1 3 DEQDQLLPIANVGRIMKQILPPSAKLSKEAKQTMQECATEFVSFVTGEASDKCHKENRKTVNGDDICWALSVLGFDNYAEAIVRYLHKYREAERE 97 69*******************************************************************************************99 PP NF-YB 97 k 97 k Thecc1EG026629t1 98 K 98 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.9E-51	2	125	IPR009072	Histone-fold
SuperFamily	SSF47113	1.8E-39	5	124	IPR009072	Histone-fold
Pfam	PF00808	2.1E-25	8	72	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.2E-17	36	54	No hit	No description
PRINTS	PR00615	1.2E-17	55	73	No hit	No description
PRINTS	PR00615	1.2E-17	74	92	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 145 aa Download sequence Send to blast
MVDEQDQLLP IANVGRIMKQ ILPPSAKLSK EAKQTMQECA TEFVSFVTGE ASDKCHKENR 60 KTVNGDDICW ALSVLGFDNY AEAIVRYLHK YREAEREKAS QNKATSSQDK DEESSEDKNG 120 QPAQQTEAPP TPVTMGDNSV TEPS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	3e-40	2	93	1	92	Transcription factor HapC (Eurofung)
4g92_B	3e-40	2	93	1	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00133	DAP	Transfer from AT1G09030	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007030959.1	1e-105	PREDICTED: nuclear transcription factor Y subunit B-4
Swissprot	O04027	2e-57	NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBL	A0A061F331	1e-104	A0A061F331_THECC; Nuclear transcription factor Y subunit B-4
STRING	EOY11461	1e-104	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM255	28	229

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09030.1	1e-58	nuclear factor Y, subunit B4

Link Out ? help Back to Top
Phytozome	Thecc1EG026629t1
Entrez Gene	18600451

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]