PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG026814t1
Common NameTCM_026814
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C3H
Protein Properties Length: 134aa    MW: 14627.4 Da    PI: 8.7368
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG026814t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.62.4e-095981527
                      --SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                      +C++f +tG+C++Gd+Ck+ H++
  Thecc1EG026814t1 59 ICNRFVKTGFCQFGDNCKYFHPK 81
                      7********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.65E-13443No hitNo description
PfamPF062201.5E-9539IPR013085Zinc finger, U1-C type
PROSITE profilePS5010314.1085482IPR000571Zinc finger, CCCH-type
SMARTSM003568.5E-45681IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-85784IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-75985IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-75981IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MPLGKYNCDY CEKQFQDTPS ARKRHLQGLQ HLRAKAQWYH SQNANDPNHS LTEPFAKGIC  60
NRFVKTGFCQ FGDNCKYFHP KNDSRGANPQ AAAAPAPGSV EGAGIGMSWG NLPPSLKPPP  120
EGGYPPLPFV DWG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007031228.13e-96PREDICTED: zinc finger CCCH domain-containing protein 3
SwissprotQ0JP115e-42C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A061F3528e-95A0A061F352_THECC; C2H2 and C2HC zinc fingers superfamily protein, putative
STRINGEOY117301e-95(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104742225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.11e-32C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]