PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG026842t1
Common NameTCM_026842
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family M-type_MADS
Protein Properties Length: 274aa    MW: 30499 Da    PI: 9.623
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG026842t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.61.4e-174584342
                      --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
            SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                      i n+s r+ tf kR++g+lKK +ELS+LC++e++ ii+s+
  Thecc1EG026842t1 45 ITNDSARKATFKKRKKGLLKKVNELSTLCGIEACAIIYSP 84
                      89*************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-253594IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.5353583IPR002100Transcription factor, MADS-box
CDDcd002664.65E-2336119No hitNo description
SuperFamilySSF554557.46E-2536129IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-103757IPR002100Transcription factor, MADS-box
PfamPF003193.9E-184585IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-105772IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-107293IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MDGGACVTTR DFSPKQTVGC ACTNNPLAAH VYVAMTRKKV KLAYITNDSA RKATFKKRKK  60
GLLKKVNELS TLCGIEACAI IYSPYDAQPE VWPSPAGAQR VLSDFKKMPE MEQSKKMVSQ  120
ESFLRQRIAK ANEQLKRQCR DNREKEITQV MFQCLVGKGL QNLNMMDLND LGWLLEQNLK  180
DIDKRIDTLN KASHSRGSAT ASSGTTMATL DARLKNGEKV QAESSDREVS METAQRQQWI  240
KDLMHPPEHV GLGSVLPFGD NNPTALWSNA FFP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13658RKKVKLAYITNDSARKATFKKRK
25559KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017976708.11e-179PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK33e-69AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A061F4E90.0A0A061F4E9_THECC; Agamous-like MADS-box protein A
STRINGEOY117730.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.16e-55AGAMOUS-like 80
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]