PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG026903t1

Common Name

TCM_026903

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

BES1

Protein Properties

Length: 210aa MW: 22867 Da PI: 8.4887

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG026903t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	111.3	1.6e-34	28	103	2	76
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr.kgskpl 76 g gr +++ E+E++k RER+RRai++ i+ GLR++G+y+l raD+n+Vl+ L++eAGwvve+DGttyr +++++ Thecc1EG026903t1 28 GRGRGRSEIEKERTKMRERQRRAITTNIFHGLRRHGGYHLFPRADINQVLRQLANEAGWVVEPDGTTYRsVSFSKT 103 568999999************************************************************3233333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	5.8E-32	28	127	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MQQRPQTIAA LICWTAFSFV KEMGEGRGRG RGRSEIEKER TKMRERQRRA ITTNIFHGLR 60 RHGGYHLFPR ADINQVLRQL ANEAGWVVEP DGTTYRSVSF SKTANCCPVC GAMKPITAPT 120 PSSSVVIGGG ECSTTASPRH NPVAAVEDPI RVIDSFCDNL IPIAPYIYGG EDGVSTLALQ 180 QLYPQEAAPP SQCMPPGSPL VRGNKEENI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017979214.1	1e-137	PREDICTED: beta-amylase 7 isoform X1
TrEMBL	A0A061G7D3	1e-154	A0A061G7D3_THECC; Beta-amylase 7
STRING	EOY25486	1e-155	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22944	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45880.1	5e-19	beta-amylase 7

Link Out ? help Back to Top
Phytozome	Thecc1EG026903t1
Entrez Gene	18595041

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]