PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG027142t1

Common Name

TCM_027142

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

ZF-HD

Protein Properties

Length: 293aa MW: 32076.2 Da PI: 8.202

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG027142t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	103	1.9e-32	65	121	2	59
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 + vrY+eClkNhAa++Gg+a+DGCgEfmps geeg+++al+C+AC+CHRnFHR+e e Thecc1EG027142t1 65 KVVRYRECLKNHAAAMGGNATDGCGEFMPS-GEEGSIEALTCSACNCHRNFHRKEIEG 121 679************************9.999******************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	3.7E-29	67	119	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	3.0E-26	67	127	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	2.2E-31	68	119	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.612	69	118	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	1.2E-30	203	277	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.97E-19	211	276	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	4.7E-27	215	271	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048574	Biological Process	long-day photoperiodism, flowering
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MELSSQEGEM PIPLNSTYGG GHMIHHDHHA APHNHIIVSS APQITCTGPS IPTNLDDDHH 60 VGFKKVVRYR ECLKNHAAAM GGNATDGCGE FMPSGEEGSI EALTCSACNC HRNFHRKEIE 120 GEPSPSSCDC YPSHSPHLSR AGRKLFLGHH KSILPPEALG LGYPTATGTL IHSRAAPTPT 180 PHQMIMSYNM GSLPSESDDQ ADGGGVVTRP HQLVKKRFRT KFTQEQKEKM LNFADKVGWK 240 IQKQEEAVVQ QFCQEIGVKR RVLKVWMHNN KHNLAKKNPS STTTPTTTTP AT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	4e-24	216	281	18	79	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269\|PubMed:22319055}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by exposure to long days. {ECO:0000269\|PubMed:22319055}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017979046.1	0.0	PREDICTED: zinc-finger homeodomain protein 4
Swissprot	Q9M9S0	2e-82	ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBL	A0A061GFH0	0.0	A0A061GFH0_THECC; Homeobox protein 31
STRING	EOY25774	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3339	26	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14440.2	8e-81	homeobox protein 31

Link Out ? help Back to Top
Phytozome	Thecc1EG027142t1
Entrez Gene	18595231

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]