PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG028302t1
Common NameTCM_028302
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family NAC
Protein Properties Length: 251aa    MW: 27921.4 Da    PI: 4.2472
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG028302t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM79.19.7e-25687181
               NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksg 81
                      l+pGfrFhPtd el ++yL++kv gkk+++ e+i+evdiyk+ PwdL+ +  ++ ++ +wyfF++ +kky + +r nrat+ g
  Thecc1EG028302t1  6 LAPGFRFHPTDVELCQYYLRRKVLGKKFSF-EAIAEVDIYKYAPWDLRdEsLLRIGDLKWYFFCPMEKKYGKWSRFNRATAYG 87
                      579*************************99.89**************85346666899*********************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.89E-283111IPR003441NAC domain
PROSITE profilePS5100522.0456154IPR003441NAC domain
PfamPF023651.8E-11879IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MERNSLAPGF RFHPTDVELC QYYLRRKVLG KKFSFEAIAE VDIYKYAPWD LRDESLLRIG  60
DLKWYFFCPM EKKYGKWSRF NRATAYGLED EPLLDKGVVQ DAYILCVIFC KDGPGHRNGA  120
QYGAPFREED LTDDEEVIKE VSNSTDLPTP TFTGAARPCF PQSQCLGSPA ESSHFAASPS  180
VVLDANKSLT PMEASQVLVD DSISAMLSSG QSEDYSPVAI ANDDLEFLES PEIAVDDEIM  240
SLLATLNVIT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-21510714114Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021298777.11e-162NAC domain-containing protein 82-like
SwissprotQ9FY828e-50NAC82_ARATH; NAC domain-containing protein 82
TrEMBLA0A061GBJ10.0A0A061GBJ1_THECC; NAC domain containing protein 82, putative
STRINGEOY265170.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36922562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.43e-52NAC domain containing protein 82
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Deeken R, et al.
    Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
    Plant J., 2008. 55(5): p. 746-59
    [PMID:18485061]
  3. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  4. Ohbayashi I, et al.
    Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis.
    Plant Cell, 2017. 29(10): p. 2644-2660
    [PMID:28899981]