PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG028312t1
Common NameTCM_028312
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C3H
Protein Properties Length: 262aa    MW: 29395.7 Da    PI: 8.7065
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG028312t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.63.4e-0687109426
                       ---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                       +lCr f  +  C+yG+rC+F H+
  Thecc1EG028312t1  87 KLCRMFCNGRNCSYGGRCRFLHV 109
                       6888888889************6 PP
2zf-CCCH35.51.7e-11160186127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       +kt+lC+++  tG C yG  C++aHg+
  Thecc1EG028312t1 160 WKTKLCNNWKMTGGCAYGKACCYAHGE 186
                       8************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.94883111IPR000571Zinc finger, CCCH-type
SMARTSM003560.006184110IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-586112IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-587108IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-15155191IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-6159186IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-9159190IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.507159187IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-9160186IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MLSNYNMNIS RDANEPMLQW WPQHPIQGKD IETSCLIEYP SFKKRRICEN FFANPSILVA  60
MEEVASGSFK ARQCGPKWKE FADDSKKLCR MFCNGRNCSY GGRCRFLHVI PDKFRDISMI  120
NIVPGAGPVS QNRGSGELDC KGSVGSLSVG NEGVPKQASW KTKLCNNWKM TGGCAYGKAC  180
CYAHGETELQ KLHGHFALES WSVPTFAWKD VHKNGNGIGN HIKQQLQETK GSLKRKEIVK  240
LCDIYADWIE DMTTLPTPSY K*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021298647.11e-129zinc finger CCCH domain-containing protein 56-like isoform X2
TrEMBLA0A061GBJ80.0A0A061GBJ8_THECC; Uncharacterized protein isoform 1
STRINGEOY265220.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2990322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.17e-20C3H family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]