PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG028312t2

Common Name

TCM_028312

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

C3H

Protein Properties

Length: 194aa MW: 21684.8 Da PI: 8.4871

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG028312t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.2	2.2e-06	87	109	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +lCr f + C+yG+rC+F H+ Thecc1EG028312t2 87 KLCRMFCNGRNCSYGGRCRFLHV 109 6888888889************6 PP
2	zf-CCCH	36.1	1.1e-11	160	186	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC+++ tG C yG C++aHg+ Thecc1EG028312t2 160 WKTKLCNNWKMTGGCAYGKACCYAHGE 186 8************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.948	83	111	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0061	84	110	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.1E-5	86	112	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.1E-5	87	108	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.2E-13	154	188	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.32E-9	157	190	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.1E-6	159	186	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.507	159	187	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.7E-9	160	186	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MLSNYNMNIS RDANEPMLQW WPQHPIQGKD IETSCLIEYP SFKKRRICEN FFANPSILVA 60 MEEVASGSFK ARQCGPKWKE FADDSKKLCR MFCNGRNCSY GGRCRFLHVI PDKFRDISMI 120 NIVPGAGPVS QNRGSGELDC KGSVGSLSVG NEGVPKQASW KTKLCNNWKM TGGCAYGKAC 180 CYAHGETEAS WPFC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021298645.1	1e-122	mRNA decay factor CTH2-like isoform X1
TrEMBL	A0A061GAS1	1e-143	A0A061GAS1_THECC; Uncharacterized protein isoform 2 (Fragment)
STRING	EOY26522	1e-139	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	2e-16	C3H family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG028312t2
Entrez Gene	18595753

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]