PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG028688t1

Common Name

TCM_028688

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Trihelix

Protein Properties

Length: 398aa MW: 45777 Da PI: 4.3359

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG028688t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	51	3.9e-16	163	247	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmre.rgferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt++e+ +L++a ++ + +r++l+ W++v+++++e ++er+ +qC+++++ l+k+ykk+k++ + t ++s+++yf++++ Thecc1EG028688t1 163 WTERETFVLLDAWGDRFLQRGRKSLRSEEWQDVAERVSEvSKIERTDTQCRNRLDTLKKKYKKEKAMLAE-TGATTSKWVYFRKMD 247 ***********************************762678**********************9.577888******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.7E-4	161	228	IPR009057	Homeodomain-like
Pfam	PF13837	9.5E-22	162	249	No hit	No description
PROSITE profile	PS50090	6.26	163	220	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MDDIEDDARY PPNPYGVTHQ QGYGSLNRQK LPVRNAPYAR PIVNQYVDDD EDEEEEEDEE 60 DLGEEEENHN QNNGVRYVGK DMDDDDDDDE LDEDEDDDDE GGDKQKGYNR KSDEVDLERH 120 PKKRKLKSLV SSYEFAPRVP AAAVAATSVP KPSYGGRNSL TDWTERETFV LLDAWGDRFL 180 QRGRKSLRSE EWQDVAERVS EVSKIERTDT QCRNRLDTLK KKYKKEKAML AETGATTSKW 240 VYFRKMDMLM STPPQQGGLS CGLDSGEYVF MNPRVYLNRA NGLDEMRDSP ANSESADGEE 300 DISDGLPPKK RRFGRQSDEG SSFRLLADSI QKFSDIYEKI ENSKRQQMLE LEKMRMDFHR 360 ELEMQKRQIM ERAQAEIAKI QQGDDEENDV SAENASE*

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MDDIEDDARY PPNPYGVTHQ QGYGSLNRQK LPVRNAPYAR PIVNQYVDDD EDEEEEEDEE  60
DLGEEEENHN QNNGVRYVGK DMDDDDDDDE LDEDEDDDDE GGDKQKGYNR KSDEVDLERH  120
PKKRKLKSLV SSYEFAPRVP AAAVAATSVP KPSYGGRNSL TDWTERETFV LLDAWGDRFL  180
QRGRKSLRSE EWQDVAERVS EVSKIERTDT QCRNRLDTLK KKYKKEKAML AETGATTSKW  240
VYFRKMDMLM STPPQQGGLS CGLDSGEYVF MNPRVYLNRA NGLDEMRDSP ANSESADGEE  300
DISDGLPPKK RRFGRQSDEG SSFRLLADSI QKFSDIYEKI ENSKRQQMLE LEKMRMDFHR  360
ELEMQKRQIM ERAQAEIAKI QQGDDEENDV SAENASE*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF313483	0.0	KF313483.1 Firmiana danxiaensis microsatellite a7937_SSR23 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007024104.2	0.0	PREDICTED: trihelix transcription factor ASIL2
TrEMBL	A0A061GAY6	0.0	A0A061GAY6_THECC; Alcohol dehydrogenase transcription factor Myb/SANT-like family protein
STRING	EOY26726	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15605	9	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	5e-72	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG028688t1
Entrez Gene	18595893

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]