PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG028851t1
Common NameTCM_028851
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 240aa    MW: 26238.9 Da    PI: 4.6715
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG028851t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.57.8e-1959109155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  Thecc1EG028851t1  59 PVYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 109
                       68*****998.**********843...6**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.4E-1359109IPR001471AP2/ERF domain
SMARTSM003802.5E-3660123IPR001471AP2/ERF domain
PROSITE profilePS5103223.35460117IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.2E-3260118IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-2160118IPR016177DNA-binding domain
PRINTSPR003672.4E-106172IPR001471AP2/ERF domain
CDDcd000187.91E-3261119No hitNo description
PRINTSPR003672.4E-108399IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MTETNHSSSE VESCSSNNSN SSASSSSQTR QNLPRKSNPA QSPEDSRAKK PRDSSSKHPV  60
YRGVRMRSWG KWVSEIREPR KKSRIWLGTF PTPEMAARAH DVAALSIKGD SAILNFPELA  120
ELLPRPVSLM PRDIQAAAAK AASMVNFDTL SSSSSSSPES SSLSESNASE EPEELGEIVQ  180
LPNIEGNFDS LFDSRNEFIL LDSVDGWAYP PQDFYGGFCD QIWATENLIP GSFGTSMWE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1952118673Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559252e-37EF155925.1 Populus trichocarpa TINY-like protein (TINYL6) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007024262.11e-174PREDICTED: ethylene-responsive transcription factor TINY
SwissprotQ391272e-61TINY_ARATH; Ethylene-responsive transcription factor TINY
TrEMBLA0A061GIH91e-173A0A061GIH9_THECC; Integrase-type DNA-binding superfamily protein
STRINGEOY268841e-174(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.13e-59ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]