PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG028873t1
Common NameTCM_028873
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family HB-other
Protein Properties Length: 321aa    MW: 36974 Da    PI: 6.3673
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG028873t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox18.63.3e-0647105753
                       --HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHH CS
          Homeobox   7 ftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRa 53 
                       ft  ++ e+e+ +++  ++++++e  +eLA++            +t +qV++WFq + +
  Thecc1EG028873t1  47 FTLAEILEMENIYKEigEKTLNKEFCQELATNFscssnrmgksAVTWQQVQIWFQEKQM 105
                       88899*********888**************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.3E-447113IPR009057Homeodomain-like
SuperFamilySSF466894.75E-547112IPR009057Homeodomain-like
PfamPF167191.2E-21148230IPR032001SAWADEE domain
PfamPF167191.2E-10265315IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006306Biological ProcessDNA methylation
GO:0006346Biological Processmethylation-dependent chromatin silencing
GO:0031047Biological Processgene silencing by RNA
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MTLFTLLKPP KTKSIVTFKG NSACIGKDFR FWSVMDDKDS WDSVSEFTLA EILEMENIYK  60
EIGEKTLNKE FCQELATNFS CSSNRMGKSA VTWQQVQIWF QEKQMETQSK QRPSPMALEL  120
FVDLSSANSS KPPGSLRRHK GKVEDLKELS FEARSSKDYA WYDVDSFLTY RVLSTGELEV  180
RVRFSGFAKT EDEWVNVEKA VRERSIPLEP SECNIVKIGD LVLCYQTQRP DDLLIFPCNS  240
PVYGLALRSN GRVYLTDIDG EGTVRKDREH YQVYYDAHVV DIQRRVHDVR GCSCIFVVCY  300
DHDYSKEKVP LQRLCCRPPQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iup_A9e-471483203135SAWADEE HOMEODOMAIN HOMOLOG 1
4iup_B9e-471483203135SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021294598.10.0LOW QUALITY PROTEIN: protein SAWADEE HOMEODOMAIN HOMOLOG 1-like
TrEMBLA0A061GIK30.0A0A061GIK3_THECC; F9L1.16, putative isoform 1
STRINGEOY269090.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.13e-51sequence-specific DNA binding transcription factors;sequence-specific DNA binding
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]