PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG029050t1
Common NameTCM_029050
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family LBD
Protein Properties Length: 192aa    MW: 21873.8 Da    PI: 7.0752
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG029050t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.71.9e-38141131100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       aCaaCk+ rrkCa+dC+lapyfp++++++f ++hklFG+ n++k++k+l+  e+++am+++++++++ra+dPv G++++i++lq+q+e ++ae
  Thecc1EG029050t1  14 ACAACKYRRRKCAPDCILAPYFPHDRQRQFLIAHKLFGVCNITKVIKDLNSPEKDIAMHTIIFQSDVRANDPVGGCYRIIQELQHQIEYSQAE 106
                       7******************************************************************************************** PP

            DUF260  94 lallkee 100
                       l+l+ ++
  Thecc1EG029050t1 107 LDLVFHQ 113
                       *998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.1713114IPR004883Lateral organ boundaries, LOB
PfamPF031952.1E-3514109IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MSILKTRSNG TTQACAACKY RRRKCAPDCI LAPYFPHDRQ RQFLIAHKLF GVCNITKVIK  60
DLNSPEKDIA MHTIIFQSDV RANDPVGGCY RIIQELQHQI EYSQAELDLV FHQLAICRAQ  120
AHQQQQQSHL QVQEPGDSTL GCEMVNADPL NSYNSNNYYV EEPQEQQFAV DNHHHHLMIF  180
GAFKNPQPVN L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-2581145111LOB family transfactor Ramosa2.1
5ly0_B8e-2581145111LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007024503.21e-102PREDICTED: LOW QUALITY PROTEIN: LOB domain-containing protein 22
SwissprotQ9LRW13e-61LBD22_ARATH; LOB domain-containing protein 22
TrEMBLA0A061GCI71e-141A0A061GCI7_THECC; LOB domain-containing protein 22
STRINGEOY271231e-142(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64982645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.13e-56LOB domain-containing protein 22
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]