PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG029130t1
Common NameTCM_029130
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family GRF
Protein Properties Length: 358aa    MW: 39983.1 Da    PI: 8.9254
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG029130t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC771.9e-2474117144
               WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                       d+epgrCrRtDGKkWRCs+++++ +k+CErH+hrgr+rsrk++e
  Thecc1EG029130t1  74 DPEPGRCRRTDGKKWRCSKEAYPESKYCERHMHRGRNRSRKPVE 117
                       79***************************************998 PP
2QLQ61.13.1e-21843136
               QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                      s+FT++Q+q+L++Q+l++Ky+++++P+PpeL+  ++
  Thecc1EG029130t1  8 SPFTPTQWQELEHQALIFKYMVSGVPIPPELIYSVK 43
                      89*****************************87665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009518.2E-13844IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088807.8E-16942IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.68944IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.67374118IPR014977WRC domain
PfamPF088791.4E-2075117IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MISARNRSPF TPTQWQELEH QALIFKYMVS GVPIPPELIY SVKRSLDSSL ASRLFPHQPI  60
GWGCFQVGFG RKADPEPGRC RRTDGKKWRC SKEAYPESKY CERHMHRGRN RSRKPVEVNS  120
TTAVCTTPPP TTSSILSPSF STINRNLSIS TSSNSSLSSS SSSFSFSPLS SSPIAPEIYA  180
HHNPNQITHL NPFLYSHPST STRPPGSGLS FQNDTSPHHF LDSGAGIVSY SHANKDYRYV  240
HGTREGMDER SFFPEASGSA RVVSDSYQPL TVSSYKSYPQ SEYQSFGDSG SKQRQQQQQE  300
QHCFVLGTDI KSARPIKLEK DDETQKQVHQ FFGDHWPPRN TDSWLDLASN SGVHSDS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4680357e-63AM468035.1 Vitis vinifera contig VV78X155042.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007024621.20.0PREDICTED: growth-regulating factor 5
TrEMBLA0A061GCX30.0A0A061GCX3_THECC; Growth-regulating factor 5, putative
STRINGEOY272430.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45672651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.12e-67growth-regulating factor 5
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]