PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG029209t1
Common NameTCM_029209
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family Trihelix
Protein Properties Length: 397aa    MW: 43332.2 Da    PI: 9.6537
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG029209t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.59.8e-1585172186
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       +W++  + +Li+a  e+  +l+rg+lk+++W+ev++ +  ++ ++++pk   qCk++++ ++k+yk +k+   ++  +  s++++f++l+
  Thecc1EG029209t1  85 CWSEGATAVLIDAWGERYLELSRGNLKQKHWKEVADIVsGREDYTKTPKtdiQCKNRIDTVKKKYKLEKAKIAGG--GGPSKWVFFEKLD 172
                       7*************************************856666666543339******************9997..67778******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.5E-2683174No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MEEDEDIQSH PSAGAAGSPS PSSPSRPSNG RITVTVAAAP PSEASPPQEP HQQENALALA  60
LLPPQQQPSQ PKNNGGGGGG GREDCWSEGA TAVLIDAWGE RYLELSRGNL KQKHWKEVAD  120
IVSGREDYTK TPKTDIQCKN RIDTVKKKYK LEKAKIAGGG GPSKWVFFEK LDQLIGPTAK  180
IAVHTSAVGG GSGGSTGLLS KVPMGIPVGI RSSLNPFRNS QLQERQQQQK QPRMVVQKNQ  240
NKMQLRKRGP VDSDSEEEEE EEEEEADSLD SLPPPPTGKR ARRMVHKGVN SGGKGRKWGN  300
SVRELTQAIL RFGEAYEQAE SAKLQQVVEM EKQRMKFAKE LELQRMQFFM KTQLEISQLK  360
HGRKAGGIGN SSNHHSNINN NNNNNNSNNN HSDSSN*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007024721.20.0PREDICTED: trihelix transcription factor ASIL2
SwissprotQ9LJG81e-127ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A061GD620.0A0A061GD62_THECC; Sequence-specific DNA binding transcription factors, putative
STRINGEOY273430.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62622543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.13e-75sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]