PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG029711t1

Common Name

TCM_029711

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bHLH

Protein Properties

Length: 321aa MW: 35625.9 Da PI: 8.6937

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG029711t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.3	3.2e-09	81	108	3	30
HHHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 3 rahnerErrRRdriNsafeeLrellPka 30 ++h+e+E+rRR+riN +++Lr llP + Thecc1EG029711t1 81 KSHSEAEKRRRERINAHLDTLRGLLPCR 108 58************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.338	78	179	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-6	81	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.36E-5	81	107	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.1E-10	82	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.4E-9	82	106	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0024	84	185	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.4E-9	157	184	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.1E-10	162	182	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MFRMAAYSFN NNFSSGNCYS GLFNPLSRDM GPRNGSSHGG SLSVLVSQTL VLDSEKGELV 60 KAPVKVGKKS VSEEKVIAAL KSHSEAEKRR RERINAHLDT LRGLLPCREK RALMAKVAFS 120 HGIVLIICCP PREKKENEAK FTERKEEDSL YVWICSMLTK LEMDKATLLG EVIRQVKELK 180 KNATEASKGF LVPMDDDEVR VEPCEDEANG ILLFKASICC DYRPELLTDL RRALDALPIK 240 MVKAETSTLG SRLKNDFVFA GCRTAHADEA EARRFLACSI HQALNSVLEK ASASPEYSPS 300 SIFPNKRRRM SHFDSSSSSS *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021294199.1	0.0	putative transcription factor bHLH107 isoform X2
TrEMBL	A0A061GF20	0.0	A0A061GF20_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1
STRING	EOY28023	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15581	10	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56770.1	3e-19	bHLH family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG029711t1
Entrez Gene	18596703

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]