PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG029774t1

Common Name

TCM_029774

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

LBD

Protein Properties

Length: 258aa MW: 28763.3 Da PI: 8.0226

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG029774t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	115.4	3.7e-36	15	110	1	96
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 aCaaCk++rrkC +dCv+ap+fpa++++ f+ vhk+FG++nv++ll++l++++r++a++sl +eA a+ +dPv G +g+++kl+++le lk++ Thecc1EG029774t1 15 ACAACKHQRRKCDNDCVFAPHFPANRAHYFREVHKIFGVKNVTNLLEHLDDNDRRRAVESLQWEAFAWKEDPVLGPLGLFKKLEKELELLKEQ 107 7*******************************************************************************************9 PP DUF260 94 lal 96 l+ Thecc1EG029774t1 108 LNN 110 985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.726	14	115	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-34	15	109	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MSSGNGEEVL NSRHACAACK HQRRKCDNDC VFAPHFPANR AHYFREVHKI FGVKNVTNLL 60 EHLDDNDRRR AVESLQWEAF AWKEDPVLGP LGLFKKLEKE LELLKEQLNN PQPVVPYQTK 120 SGLIGFNHNS AGFVANGDDI SIANFGYANS PNLGLDVNMN NYAGFFQRAD NMENQGVNNI 180 PVVPYYPIPE GQGRLVMQER VLDPVVRTTP VLPKQDAQSN QIIGSSMRPA SHQRGSQGRA 240 HAYYDGSVSG PQARRMH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-22	16	109	12	105	LOB family transfactor Ramosa2.1
5ly0_B	6e-22	16	109	12	105	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007025493.2	0.0	PREDICTED: LOB domain-containing protein 2
TrEMBL	A0A061GE10	0.0	A0A061GE10_THECC; LOB domain-containing-like protein
STRING	EOY28115	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM19603	6	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	3e-26	LOB domain-containing protein 2

Link Out ? help Back to Top
Phytozome	Thecc1EG029774t1
Entrez Gene	18596758

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]