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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Thecc1EG029792t3 | ||||||||
| Common Name | TCM_029792 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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| Family | ARF | ||||||||
| Protein Properties | Length: 746aa MW: 81438.9 Da PI: 7.067 | ||||||||
| Description | ARF family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 77.9 | 1.1e-24 | 157 | 258 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87
f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F +
Thecc1EG029792t3 157 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyN-QQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL--RG 246
99****************************963.3445679************************************************..44 PP
SEE..EEEEE-S CS
B3 88 sefelvvkvfrk 99
+++el+++++r+
Thecc1EG029792t3 247 EDGELRLGIRRA 258
9999*****996 PP
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| 2 | Auxin_resp | 118.7 | 4.7e-39 | 283 | 365 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnP.rastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82
++ha+s+ksvF+++YnP ras+seF+++v+k+ k+l+++++vGmRfkm+feted++err++G+v+g+sd+dpvrWp+SkWr+L
Thecc1EG029792t3 283 VVHAISMKSVFSIYYNPsRASSSEFIIPVHKFWKSLDHSFAVGMRFKMRFETEDAAERRYTGLVTGISDMDPVRWPGSKWRCL 365
689**************7799*************************************************************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF101936 | 1.11E-42 | 149 | 266 | IPR015300 | DNA-binding pseudobarrel domain |
| Gene3D | G3DSA:2.40.330.10 | 1.8E-40 | 152 | 261 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 1.44E-22 | 155 | 257 | No hit | No description |
| SMART | SM01019 | 2.5E-23 | 157 | 259 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50863 | 13.507 | 157 | 259 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 1.1E-22 | 157 | 258 | IPR003340 | B3 DNA binding domain |
| Pfam | PF06507 | 1.3E-33 | 283 | 365 | IPR010525 | Auxin response factor |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
| GO:0010050 | Biological Process | vegetative phase change | ||||
| GO:0010158 | Biological Process | abaxial cell fate specification | ||||
| GO:0010582 | Biological Process | floral meristem determinacy | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 746 aa Download sequence Send to blast |
MGGLIDLNTT EDDETPSSGS LSPSSSSTSV LSASGISAPG SASSSSVCLE LWHACAGPLI 60 SLPKRGSVVV YFPQGHLEQV SDFSGVAAAY DLPPHVFCRV VDVKLHAEAA TDEVYAQVSL 120 VPESEQTEQK LREGKIEAGG EEEDVEADIK STTPHMFCKT LTASDTSTHG GFSVPRRAAE 180 DCFPPLDYNQ QRPSQELVAK DLHGLEWRFR HIYRGQPRRH LLTTGWSAFV NKKKLVSGDA 240 VLFLRGEDGE LRLGIRRAAQ IKNGTSFPSL CSQQLNRSNF ADVVHAISMK SVFSIYYNPS 300 RASSSEFIIP VHKFWKSLDH SFAVGMRFKM RFETEDAAER RYTGLVTGIS DMDPVRWPGS 360 KWRCLLVRWD DIDANRHSRV SPWEIELSGT ISSSNNLLTP GVKRNRIGLP SGKPEFMVPD 420 GIGASDFGEP LRFQKVLQGQ EILGFNTLYD GADGQNLHRS EIRRCFPGSN GSGIVAIGNV 480 GRDPLGNSEI SYRGVGFGES FRFHKVLQGQ EIYVSPPYIR GPTTNDTQEN DGLGVRDAGQ 540 FSGTRSGWSS LMQSYNTHSH IRPSAPSAQV SSPSSVLMFQ QASNPIPNIN PIYSVNNQEK 600 EQGVDNRSSF RAPEMYGGKL LQSSTGECSS RGRHHGTFDS FGHSNDSVQL GDSQPLAAQP 660 TFRTSQDIAS SCKSSCRLFG FSLTEGSQDA NKEDNMVKAT SSLGPRAFLP CIGEQFHPKP 720 PAVTNTVGSN CTKGILQRCL KNYIY* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 4ldy_A | 1e-117 | 39 | 394 | 11 | 361 | Auxin response factor 1 |
| 4ldy_B | 1e-117 | 39 | 394 | 11 | 361 | Auxin response factor 1 |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in the establishment or elaboration of tissue patterning during gynoecial development. {ECO:0000269|PubMed:10952886, ECO:0000269|PubMed:12036261}. | |||||
| Binding Motif ? help Back to Top | |||
|---|---|---|---|
| Motif ID | Method | Source | Motif file |
| MP00021 | PBM | Transfer from AT2G33860 | Download |
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| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: Negatively regulated by AHL21/GIK. {ECO:0000269|PubMed:19956801}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
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| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | Retrieve | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_007025520.2 | 0.0 | PREDICTED: auxin response factor 3 isoform X3 | ||||
| Swissprot | O23661 | 0.0 | ARFC_ARATH; Auxin response factor 3 | ||||
| TrEMBL | A0A061GG84 | 0.0 | A0A061GG84_THECC; Auxin response factor | ||||
| STRING | EOY28143 | 0.0 | (Theobroma cacao) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G33860.1 | 0.0 | ARF family protein | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | Thecc1EG029792t3 |
| Entrez Gene | 18596775 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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