PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG029805t3

Common Name

TCM_029805

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

HB-other

Protein Properties

Length: 1713aa MW: 193446 Da PI: 5.3002

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG029805t3	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.8	8.9e-19	29	84	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t++qle+Le++++ + yps+++r+ L++klgL++rq ++WF+ rR kekk Thecc1EG029805t3 29 PKRQMKTPYQLEALEKAYALETYPSEATRAGLSEKLGLSDRQLQMWFCHRRLKEKK 84 69*****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.0E-18	7	85	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.41E-16	17	85	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.212	25	85	IPR001356	Homeobox domain
SMART	SM00389	1.7E-16	27	89	IPR001356	Homeobox domain
Pfam	PF00046	1.7E-16	29	84	IPR001356	Homeobox domain
CDD	cd00086	1.89E-13	30	85	No hit	No description
SMART	SM00571	4.2E-22	512	571	IPR018501	DDT domain
PROSITE profile	PS50827	16.486	512	571	IPR018501	DDT domain
Pfam	PF02791	1.0E-16	513	568	IPR018501	DDT domain
Pfam	PF05066	7.3E-15	694	761	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	3.0E-8	907	951	IPR028942	WHIM1 domain
Pfam	PF15613	1.5E-12	1092	1164	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1713 aa Download sequence Send to blast
MDPGSEEENN PSKNPNKNVN SSNEGHVKPK RQMKTPYQLE ALEKAYALET YPSEATRAGL 60 SEKLGLSDRQ LQMWFCHRRL KEKKETPSKK PRKGAALPPE SPIDDLHAGP EPDYGSGSGS 120 GSSPYTDSRK LGGSSSRGMT EDVPTARRYY ESQQSIMELR AIACVEAQLG EPLRDDGPML 180 GMEFDPLPPD AFGAIPEPQK RSGHPYESKA YERHDGRSSK AAVRALHEYQ FLPEHASLRS 240 DAYGQVTQSH FHESPVDGAR ARATSFVHGE EPLPRVHGIQ ERESFTNGRL NTQSIGHPVL 300 GSEDSYVLST GQTLNIDADL RNDRKRKSDE NRIAREVEAH ENRIRKELEK LDLKRRKSEE 360 RMRKEMERHA RERRKEEERL VREKQREEER SQREQRREME RREKFLQKEC LRAEKRRQKE 420 ELRREKEAER RRVAMEKATA RKIAKESMDL IEDEQLELME LAAASKGIPS IIHLDHDSLQ 480 NLESFRDSLS LFPPKSVQLK RPFAIQPWID SEENVGNLLM AWRFLITFAD VLRLWPFTLD 540 EFVQAFHDYD SRLLGEIHVA LLKSIIKDIE DVARTPSTGL GMNQYCAANP EGGHPQIVEG 600 AYSWGFDIRN WQRHLNPLTW PEIFRQLAIS AGLGPQLKKR NAAWTFMGDN DEGKGCEDVV 660 STLRNGSAAE NAFVLMREKG LLLPRRSRHR LTPGTVKFAA FHVLSLEGRE GLTVLELADK 720 IQKSGLRDLT TSKTPEASIS VALTRDAKLF ERIAPSTYCV RPAYRKDPTD AEAILAAARK 780 KIRQFENGFL GGEDADEVER DEVERDEESE CDVDEEPEVD DIATPSNANK DADYPKDEVN 840 TCSGSGKVHV STDALNVPSE FDKDFSSFPP NIMKDANGPS NTGQYVAREE MGTGNPDQQN 900 IEIDESKSGE SWIQGLSEGE YSHLSVEERL NALVALIGIA NEGNSIRAVL EDRLEAANAL 960 KKQMWVEAQL DKSRLKEETM VKMDFPSMMG IKAEPQLPNS VVEGSQSPFP AAYNKNDEAS 1020 PSIPDDQKPL LCSQNVQNDL NSYPAERALV LQEASMGPDN FSAQQIGHAS KRSRSQLKSY 1080 IAHRAEEMYV YRSLPLGQDR RRNRYWQFVA SASKNDPCSG RIFVELRDGN WRLIDSEEAF 1140 DTLLTSLDAR GIRESHLRIM LQKIETSFKE NVRRNLQCAR AIGRSGSSTE NEVSELDSSP 1200 DFPASFDSPS SAICGLNFDA LETLPSFKIQ LGRNENEKKL ALKRYQDFQR WIWKECYNSS 1260 TLCAMKYGKK RCVQLLAVCD VCLRSHIPEE MHCGYCHQTF GSVNNSFNFS EHEIQCKENR 1320 KLDTKDTCTI DYSLPLGISL LKSLCALVEV SIPPEALESV WIEGRRKMWG RELNASSSVD 1380 ELLKILTHLE SAIKRDHLLS NFETTKELLG SNLQSESDSS VSVLPWIPET TAAVALRLLE 1440 LDVSIMCVKQ EKVEPSENKE ARAYIKLPSR TSLFIKNKEL ELKELDQDEA MKEENFADMS 1500 HSKRNSYKRG RGGREQGSGR KWQRRASGSR YDTGKRSARE KNNLSFRLKQ QGQRTNGRSS 1560 GRGRRTVRKR AERRAADNTM VARVADVIKP KVSDVRDLDE EWRTEKFRVM QMVNPPDSNS 1620 AEEESDDNAQ GEGYGQGNWD LDYNGASNGW NAEAMEASDE DDDAYEDDNG VEQLGEEDSD 1680 GDLEISDASD VVANKAGNDD GSDLAVSEDY SD*

Sequence ? help Back to Top

Protein Sequence Length: 1713 aa Download sequence Send to blast

MDPGSEEENN PSKNPNKNVN SSNEGHVKPK RQMKTPYQLE ALEKAYALET YPSEATRAGL  60
SEKLGLSDRQ LQMWFCHRRL KEKKETPSKK PRKGAALPPE SPIDDLHAGP EPDYGSGSGS  120
GSSPYTDSRK LGGSSSRGMT EDVPTARRYY ESQQSIMELR AIACVEAQLG EPLRDDGPML  180
GMEFDPLPPD AFGAIPEPQK RSGHPYESKA YERHDGRSSK AAVRALHEYQ FLPEHASLRS  240
DAYGQVTQSH FHESPVDGAR ARATSFVHGE EPLPRVHGIQ ERESFTNGRL NTQSIGHPVL  300
GSEDSYVLST GQTLNIDADL RNDRKRKSDE NRIAREVEAH ENRIRKELEK LDLKRRKSEE  360
RMRKEMERHA RERRKEEERL VREKQREEER SQREQRREME RREKFLQKEC LRAEKRRQKE  420
ELRREKEAER RRVAMEKATA RKIAKESMDL IEDEQLELME LAAASKGIPS IIHLDHDSLQ  480
NLESFRDSLS LFPPKSVQLK RPFAIQPWID SEENVGNLLM AWRFLITFAD VLRLWPFTLD  540
EFVQAFHDYD SRLLGEIHVA LLKSIIKDIE DVARTPSTGL GMNQYCAANP EGGHPQIVEG  600
AYSWGFDIRN WQRHLNPLTW PEIFRQLAIS AGLGPQLKKR NAAWTFMGDN DEGKGCEDVV  660
STLRNGSAAE NAFVLMREKG LLLPRRSRHR LTPGTVKFAA FHVLSLEGRE GLTVLELADK  720
IQKSGLRDLT TSKTPEASIS VALTRDAKLF ERIAPSTYCV RPAYRKDPTD AEAILAAARK  780
KIRQFENGFL GGEDADEVER DEVERDEESE CDVDEEPEVD DIATPSNANK DADYPKDEVN  840
TCSGSGKVHV STDALNVPSE FDKDFSSFPP NIMKDANGPS NTGQYVAREE MGTGNPDQQN  900
IEIDESKSGE SWIQGLSEGE YSHLSVEERL NALVALIGIA NEGNSIRAVL EDRLEAANAL  960
KKQMWVEAQL DKSRLKEETM VKMDFPSMMG IKAEPQLPNS VVEGSQSPFP AAYNKNDEAS  1020
PSIPDDQKPL LCSQNVQNDL NSYPAERALV LQEASMGPDN FSAQQIGHAS KRSRSQLKSY  1080
IAHRAEEMYV YRSLPLGQDR RRNRYWQFVA SASKNDPCSG RIFVELRDGN WRLIDSEEAF  1140
DTLLTSLDAR GIRESHLRIM LQKIETSFKE NVRRNLQCAR AIGRSGSSTE NEVSELDSSP  1200
DFPASFDSPS SAICGLNFDA LETLPSFKIQ LGRNENEKKL ALKRYQDFQR WIWKECYNSS  1260
TLCAMKYGKK RCVQLLAVCD VCLRSHIPEE MHCGYCHQTF GSVNNSFNFS EHEIQCKENR  1320
KLDTKDTCTI DYSLPLGISL LKSLCALVEV SIPPEALESV WIEGRRKMWG RELNASSSVD  1380
ELLKILTHLE SAIKRDHLLS NFETTKELLG SNLQSESDSS VSVLPWIPET TAAVALRLLE  1440
LDVSIMCVKQ EKVEPSENKE ARAYIKLPSR TSLFIKNKEL ELKELDQDEA MKEENFADMS  1500
HSKRNSYKRG RGGREQGSGR KWQRRASGSR YDTGKRSARE KNNLSFRLKQ QGQRTNGRSS  1560
GRGRRTVRKR AERRAADNTM VARVADVIKP KVSDVRDLDE EWRTEKFRVM QMVNPPDSNS  1620
AEEESDDNAQ GEGYGQGNWD LDYNGASNGW NAEAMEASDE DDDAYEDDNG VEQLGEEDSD  1680
GDLEISDASD VVANKAGNDD GSDLAVSEDY SD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	77	84	RRLKEKKE
2	353	374	KRRKSEERMRKEMERHARERRK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269\|PubMed:22694359}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ566576	2e-78	AJ566576.1 Theobroma cacao microsatellite, clone mTcCIR255.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007025543.2	0.0	PREDICTED: homeobox-DDT domain protein RLT1
Swissprot	F4HY56	0.0	RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBL	A0A061GM78	0.0	A0A061GM78_THECC; Homeodomain-like transcriptional regulator, putative isoform 3
STRING	EOY28163	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1

Link Out ? help Back to Top
Phytozome	Thecc1EG029805t3
Entrez Gene	18596787

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]