PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG029820t1
Common NameTCM_029820
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 244aa    MW: 26697.5 Da    PI: 8.2395
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG029820t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.73.9e-202474256
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                      +++GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAa+a++ a+++++g+
  Thecc1EG029820t1 24 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDTAAREFRGA 74
                      69*******.**********8...557*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.6E-382487IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-322481IPR001471AP2/ERF domain
PROSITE profilePS5103223.8542481IPR001471AP2/ERF domain
CDDcd000181.27E-302481No hitNo description
PfamPF008472.5E-132473IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-222482IPR016177DNA-binding domain
PRINTSPR003675.0E-112536IPR001471AP2/ERF domain
PRINTSPR003675.0E-114763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MAPREKTAVV KGNGNVNGNS KEVHFRGVRK RPWGRYAAEI RDPGKKSRVW LGTFDTAEEA  60
ARAYDTAARE FRGAKAKTNF PLPCENLNNG NNCNDNDNNN NSNNQSPSQS STVESSSREP  120
SLMIYSSPFD LNLGHAAVAG FETPAVRFPF QQVSPVTGVF AAGLPAVASP QLFYFDSFVR  180
PGAVKGQQYQ RMRFDHNDFH ATFNGGVQSD SDSSSVVDLN HHEIKQRPLL NIDLNQPALP  240
EIA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-212082164ATERF1
3gcc_A1e-212082164ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00542DAPTransfer from AT5G44210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007025558.21e-180PREDICTED: ethylene-responsive transcription factor 4
TrEMBLA0A061GEB21e-180A0A061GEB2_THECC; Erf domain protein 9, putative
STRINGEOY281800.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.12e-27erf domain protein 9
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]