PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG029918t2

Common Name

TCM_029918

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Dof

Protein Properties

Length: 321aa MW: 35417.4 Da PI: 9.7315

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG029918t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	115	3.2e-36	56	113	2	59
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 +++ lkcprCdstntkfCyynny+ sqPr+fCk+C+r+WtkGG+lrnvPvGggr++++ Thecc1EG029918t2 56 QSEPLKCPRCDSTNTKFCYYNNYNKSQPRHFCKTCKRHWTKGGTLRNVPVGGGRKNKR 113 57889***********************************************976665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-22	57	113	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.4E-31	59	112	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.521	60	114	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	62	98	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
EFPRIRHAPL SDRFKTSHCL AYKQESHHPA LLQAQTLGLP KASPAKRQQP QNQQQQSEPL 60 KCPRCDSTNT KFCYYNNYNK SQPRHFCKTC KRHWTKGGTL RNVPVGGGRK NKRLKTSNSS 120 TAAAAPASTS TTSAIKSSTA SGVNNNRLNT FMAVQPQQQR QDLQLPLADQ KNISNIQFQA 180 LSRPPSSLLQ QNSINCSNLD GKSFSTSNGV FLGSTLPLPQ TQGLQFPFSS SSSSSFDTTR 240 SSISTSFQSS TIYNYTGETM EDPTITSVIM PTTSGTFSQP WQVPITSSGM DMTNYWNWDD 300 IDALVSTDLN MPWDDSEIKP *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017978738.1	0.0	PREDICTED: dof zinc finger protein DOF1.1 isoform X1
TrEMBL	A0A061GEM8	0.0	A0A061GEM8_THECC; Dof-type zinc finger DNA-binding family protein, putative isoform 2 (Fragment)
STRING	EOY28319	1e-162	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07640.2	2e-29	Dof family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG029918t2
Entrez Gene	18596891

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]