PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG030287t1

Common Name

TCM_030287

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

NAC

Protein Properties

Length: 203aa MW: 23447.6 Da PI: 5.4026

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG030287t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	79.2	8.9e-25	53	181	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv...ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 p G+rF Ptde+l+ +yL +k++g+ l++ + i++++iy ePw++ + ++ ++ y F+k +kk +gkr +r + +g+Wk + + + Thecc1EG030287t1 53 PWGYRFVPTDEDLILHYLSNKAKGEALPC-QGITDCEIYGDedkEPWKIFGR--TSAEKFYVFIKLKKK-GKGKRIERRAGRGTWKGQRT-DP 140 88*************************.77**9653338744..455778888888765.6899999999**9866.78 PP NAM 92 vlskkgelvglkktLvfy....kgrapkgektdWvmheyrl 128 v++++++ +g kk +vf + ++ k + +W+m ey+l Thecc1EG030287t1 141 VMDSENNPIGFKKLFVFEikdeDSNNVKRCHGHWLMYEYSL 181 8888*********9654333444445789****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.54E-28	48	195	IPR003441	NAC domain
PROSITE profile	PS51005	23.503	52	195	IPR003441	NAC domain
Pfam	PF02365	1.5E-16	53	181	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MTTEVALKSL FSSIEDELFI EYHTQSTTTE VPVLDGEPDL DYYYDESMMT MVPWGYRFVP 60 TDEDLILHYL SNKAKGEALP CQGITDCEIY GDEDKEPWKI FGRTSAEKFY VFIKLKKKGK 120 GKRIERRAGR GTWKGQRTDP VMDSENNPIG FKKLFVFEIK DEDSNNVKRC HGHWLMYEYS 180 LPTETDYVLC AIRNKHATTK PA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-17	52	200	17	170	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-17	52	200	17	170	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-17	52	200	17	170	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-17	52	200	17	170	NO APICAL MERISTEM PROTEIN
3swm_A	7e-17	52	200	20	173	NAC domain-containing protein 19
3swm_B	7e-17	52	200	20	173	NAC domain-containing protein 19
3swm_C	7e-17	52	200	20	173	NAC domain-containing protein 19
3swm_D	7e-17	52	200	20	173	NAC domain-containing protein 19
3swp_A	7e-17	52	200	20	173	NAC domain-containing protein 19
3swp_B	7e-17	52	200	20	173	NAC domain-containing protein 19
3swp_C	7e-17	52	200	20	173	NAC domain-containing protein 19
3swp_D	7e-17	52	200	20	173	NAC domain-containing protein 19
4dul_A	8e-17	52	200	17	170	NAC domain-containing protein 19
4dul_B	8e-17	52	200	17	170	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007026159.2	1e-139	PREDICTED: NAC domain-containing protein 101
TrEMBL	A0A061GGU7	1e-150	A0A061GGU7_THECC; Uncharacterized protein
STRING	EOY28781	1e-151	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13343	7	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15500.1	2e-12	NAC domain containing protein 3

Link Out ? help Back to Top
Phytozome	Thecc1EG030287t1
Entrez Gene	18597209

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]