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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Thecc1EG030393t1 |
| Common Name | TCM_030393 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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| Family |
GRAS |
| Protein Properties |
Length: 549aa MW: 61290.5 Da PI: 6.2894 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Thecc1EG030393t1 | genome | CGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 407.3 | 1.5e-124 | 178 | 548 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93
l+++L++c +a+++gd+ + l+ l++++s +g+p+qRl ay++e+L+arl +s+s++ykal+++e + sse +++++++++v+P+ kf
Thecc1EG030393t1 178 LKQVLVACGQALHEGDMPTVAGLMHVLEKMVSVSGEPIQRLGAYVLEGLRARLESSGSSIYKALKCKEPT---SSELMSYMHILFKVCPFWKF 267
5799*****************************************************************9...99****************** PP
GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184
++ aN I e +e e ++HiiDf+i qG+QW+ L+ aLa+Rp+gpp +RiTg+++++s+ + l+ +g+rL++fA++ +vpfef+ +a
Thecc1EG030393t1 268 AYTSANVVIREVMEYEPKIHIIDFQIAQGTQWMFLIAALAKRPGGPPAIRITGIDDSQSNhaRGGGLNIVGQRLSEFAKTYNVPFEFHD-AAM 359
********************************************************9988889999***********************.899 PP
GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
+ +++le+L+v+pgEalaVn+ + lh+++desvs+ ++rd++L+lvksl Pk+v++veqe+++n+++F+ r le+l+yy+a+f+s+++ +r
Thecc1EG030393t1 360 SGCEVQLEHLKVQPGEALAVNFPYVLHHMPDESVSTWNHRDRLLRLVKSLLPKIVTLVEQESNTNTSPFFSRYLETLDYYTAMFESIDVACSR 452
99******************************************************************************************* PP
GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370
++++ri+ E+++++r+ivn++aceg er+erhe ++kWr+r+++aGF+p+pls+++++ ++ +l+ ++++ yr+ee++g+l+lgW +r++ +
Thecc1EG030393t1 453 DDKQRINAEQHCVARDIVNMIACEGPERVERHELFGKWRSRFTMAGFSPYPLSSSVTMAVRDVLKDYNNN-YRLEEREGALYLGWINRAMATS 544
********************************************************************66.********************** PP
GRAS 371 SaWr 374
SaWr
Thecc1EG030393t1 545 SAWR 548
***8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 549 aa
Download sequence Send
to blast |
MQTSQKHQTS ACIRRLYHQP VQEMEALCLP HIQILDNNVC SDVGSQGTSV SFQTYKDQFF 60
TLESSTATAG FVVYDSPSAV SISSSRSPFS PQGSQSYLSD PHHSPDNTYG SPFSGSSVVD 120
DGNEWKHKLR ELEISLLGPE SDVIDSCNCC FSSGAHQAAS MASFNCNQLV EMIPRLDLKQ 180
VLVACGQALH EGDMPTVAGL MHVLEKMVSV SGEPIQRLGA YVLEGLRARL ESSGSSIYKA 240
LKCKEPTSSE LMSYMHILFK VCPFWKFAYT SANVVIREVM EYEPKIHIID FQIAQGTQWM 300
FLIAALAKRP GGPPAIRITG IDDSQSNHAR GGGLNIVGQR LSEFAKTYNV PFEFHDAAMS 360
GCEVQLEHLK VQPGEALAVN FPYVLHHMPD ESVSTWNHRD RLLRLVKSLL PKIVTLVEQE 420
SNTNTSPFFS RYLETLDYYT AMFESIDVAC SRDDKQRINA EQHCVARDIV NMIACEGPER 480
VERHELFGKW RSRFTMAGFS PYPLSSSVTM AVRDVLKDYN NNYRLEEREG ALYLGWINRA 540
MATSSAWR*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}. |
