PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG030445t2

Common Name

TCM_030445

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Trihelix

Protein Properties

Length: 407aa MW: 46113.8 Da PI: 5.4069

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG030445t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	78.8	8.1e-25	294	378	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++ ev+aLi +r+ +e+++r + +k W+e+s m g+ rs+k+Ckekwen+nk+++k + kk+ e+s++c+yf++l+ Thecc1EG030445t2 294 RWPDAEVQALIMLRSALEHKFRVTGSKCSIWDEISVGMYNMGYCRSAKKCKEKWENINKYFRKSMGSGKKH-LENSKRCAYFHELD 378 8******************************************************************99.577789****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.458	287	351	IPR017877	Myb-like domain
Pfam	PF13837	1.2E-17	293	379	No hit	No description
CDD	cd12203	4.58E-25	293	357	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
MELFNGGRET FPHHVAPFPD LTAIGMIESA EDSMMGDHRP NLPPQKLRPI RYNGRSPASS 60 QAEDTSEFAE VVELVGDEVC PVNGDSGEYL EPPVKAEVGD VVDTGGGDGP PNSEHGGDSS 120 SSSSDSDDND MSTTLNEPLN RKRKRKKSKK IELFLEKLVM KVMEKQELMH KQLIETIEKR 180 ERERIIREEA WKQQEMERIK RDEEARAQET SRSIALISFI KNVLGHDIEI PVQSTISCME 240 ETGGKEMSEG HIQKDMISLC DPINRWQEGK MQANGGENHV HEDIGINCDP SNRRWPDAEV 300 QALIMLRSAL EHKFRVTGSK CSIWDEISVG MYNMGYCRSA KKCKEKWENI NKYFRKSMGS 360 GKKHLENSKR CAYFHELDML YKNGLVSPAN HVNWTKDENE DRGECQ*

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

MELFNGGRET FPHHVAPFPD LTAIGMIESA EDSMMGDHRP NLPPQKLRPI RYNGRSPASS  60
QAEDTSEFAE VVELVGDEVC PVNGDSGEYL EPPVKAEVGD VVDTGGGDGP PNSEHGGDSS  120
SSSSDSDDND MSTTLNEPLN RKRKRKKSKK IELFLEKLVM KVMEKQELMH KQLIETIEKR  180
ERERIIREEA WKQQEMERIK RDEEARAQET SRSIALISFI KNVLGHDIEI PVQSTISCME  240
ETGGKEMSEG HIQKDMISLC DPINRWQEGK MQANGGENHV HEDIGINCDP SNRRWPDAEV  300
QALIMLRSAL EHKFRVTGSK CSIWDEISVG MYNMGYCRSA KKCKEKWENI NKYFRKSMGS  360
GKKHLENSKR CAYFHELDML YKNGLVSPAN HVNWTKDENE DRGECQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	139	146	NRKRKRKK
2	140	145	RKRKRK
3	140	146	RKRKRKK
4	141	149	KRKRKKSKK
5	142	146	RKRKK

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00552	DAP	Transfer from AT5G47660	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007026376.1	0.0	PREDICTED: trihelix transcription factor GT-2 isoform X2
TrEMBL	A0A061GHU7	0.0	A0A061GHU7_THECC; Duplicated homeodomain-like superfamily protein, putative isoform 2
STRING	EOY28997	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47660.1	6e-44	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG030445t2
Entrez Gene	18597345

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]