PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG030498t1
Common NameTCM_030498
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family GRAS
Protein Properties Length: 439aa    MW: 49455.3 Da    PI: 6.6774
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG030498t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS408.75.7e-125474371373
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykal...ppsetseknsseelaal......kl 83 
                       +++lL++cAe vs++d+ +a++lL+ ls ++  +gd+++Rl++ ft+AL+ r++r ++++    +   +   ++ + +++++a +      + 
  Thecc1EG030498t1  47 MRQLLISCAELVSQSDFPAANRLLSILSSNSCLYGDSTERLVHQFTKALSLRINRlHGPGSLLMMmniNYPIAAATATATAIANYdidpslQS 139
                       589***************************************************976654332221112222222334444444445554411 PP

              GRAS  84 ....fsevsPilkfshltaNqaIleave.geervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLak 167
                           +++++P+++f+hltaNqaIlea++ g++ +Hi+Dfdi++G+QWp+L+qaLa+R+    ++pp+lRiTg g+    + + l++tg+rL k
  Thecc1EG030498t1 140 cylsLNQITPFIRFAHLTANQAILEAIQvGQQSIHILDFDIMHGVQWPPLMQALAERSantlHPPPMLRITGTGH----DLNILQRTGDRLFK 228
                       4567***********************9466***************************888888***********....9************* PP

              GRAS 168 fAeelgvpfefnvl...vak...rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFl 254
                       fA++lg++f+f++l     +   +++   +++L + p+EalaVn+++ lhrll+++       + +L+ +k ++P vv+++e+ea+hn++ Fl
  Thecc1EG030498t1 229 FAQSLGLRFQFHPLlvlN-NdptSVALNLPSTLTILPDEALAVNCMFYLHRLLKDDSRDL---RLFLHNIKAMNPAVVTIAEREANHNHPLFL 317
                       *************96531.21212333357899********************6665554...59**************************** PP

              GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.s 346
                       +rf+eal+yy+a+fdslea+lp++s+er  vE+ ++greiv++va+eg++rrerhe+le+W+  l++ GF++vpls +a +qaklllr ++ s
  Thecc1EG030498t1 318 QRFIEALDYYTAIFDSLEATLPPNSRERLAVEQIWFGREIVDIVAAEGENRRERHERLETWEVILRSTGFSNVPLSPFAHSQAKLLLRLHYpS 410
                       ********************************************************************************************* PP

              GRAS 347 dgyrveeesgslvlgWkdrpLvsvSaW 373
                       dgyr++  ++s++lgW++r+L+svS+W
  Thecc1EG030498t1 411 DGYRLQILNNSFFLGWQNRALFSVSSW 437
                       *************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.89721417IPR005202Transcription factor GRAS
PfamPF035141.9E-12247437IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010223Biological Processsecondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MLGSLNSTSH DQEEEDPSAP DLQQQQQQPS HSTGFTSKSH SQQATHMRQL LISCAELVSQ  60
SDFPAANRLL SILSSNSCLY GDSTERLVHQ FTKALSLRIN RLHGPGSLLM MMNINYPIAA  120
ATATATAIAN YDIDPSLQSC YLSLNQITPF IRFAHLTANQ AILEAIQVGQ QSIHILDFDI  180
MHGVQWPPLM QALAERSANT LHPPPMLRIT GTGHDLNILQ RTGDRLFKFA QSLGLRFQFH  240
PLLVLNNDPT SVALNLPSTL TILPDEALAV NCMFYLHRLL KDDSRDLRLF LHNIKAMNPA  300
VVTIAEREAN HNHPLFLQRF IEALDYYTAI FDSLEATLPP NSRERLAVEQ IWFGREIVDI  360
VAAEGENRRE RHERLETWEV ILRSTGFSNV PLSPFAHSQA KLLLRLHYPS DGYRLQILNN  420
SFFLGWQNRA LFSVSSWH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-645443726378Protein SCARECROW
5b3h_A4e-645443725377Protein SCARECROW
5b3h_D4e-645443725377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007020290.20.0PREDICTED: scarecrow-like protein 18
SwissprotQ9ZWC51e-138SCL18_ARATH; Scarecrow-like protein 18
TrEMBLA0A061F3B60.0A0A061F3B6_THECC; GRAS family transcription factor
STRINGEOY118150.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM113292733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-132GRAS family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]