PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG031756t1
Common NameTCM_031756
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family B3
Protein Properties Length: 350aa    MW: 38081 Da    PI: 9.5396
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG031756t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3322.2e-102403241090
                       HHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEE.EEE...EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                B3  10 vlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWe.vkliy.rkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                       v +++++ +p +f+++     gg    +    + d sgr+We + + y r+k ++   v+++ W++Fv  +gL +gD ++F++++++++
  Thecc1EG031756t1 240 VDAKKQMAIPSDFVKHLpphrGGY---THYFPVVDVSGRVWEnFGY-YiRGKESHpkPVFQGDWRKFVLTKGLMAGDGIIFRMERDTTR 324
                       667889********5558775333...2357889*******84666.53544444789************************9887655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.0E-11229322IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.065231334IPR003340B3 DNA binding domain
SuperFamilySSF1019364.12E-10232323IPR015300DNA-binding pseudobarrel domain
CDDcd100174.55E-16232324No hitNo description
SMARTSM010190.0067233343IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MHECKMCCVC EGNHEFKAIS RRRTLTAGFP NRWRRSCPGS ALPSGDRSGG VDGLVPSPPA  60
NFSLRRGTSR LSPNRWRIWW RDGLLSLAPA AAPLSLFLRS VRLPLASVCR FSLPHVCGLG  120
LLVLFTASSL AMADAVADVA APGNLVVFCL QVPPPPNATV PPLLYTRFSG SGGGTPHCLV  180
PGHPGASSTN LPDANFSRLA GERGAWQAMD PILEVEMPVD QPDPCIASAT ASFSEVLGEV  240
DAKKQMAIPS DFVKHLPPHR GGYTHYFPVV DVSGRVWENF GYYIRGKESH PKPVFQGDWR  300
KFVLTKGLMA GDGIIFRMER DTTRVPRYTI AAQKPLHKLF GKVIWGPEF*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A061FFJ90.0A0A061FFJ9_THECC; Uncharacterized protein
STRINGEOY132340.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16950410
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]