PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG031868t1

Common Name

TCM_031868

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

YABBY

Protein Properties

Length: 182aa MW: 20439.2 Da PI: 8.7611

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG031868t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	170.9	8.8e-53	6	158	4	170
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 +s++eq+Cy+ Cn Cn ilav+vP +slf++vtvrCG Ct+l svnla++ +a ++ + + ++++++ + s+s+ Thecc1EG031868t1 6 NSAPEQLCYIPCNLCNIILAVNVPCSSLFETVTVRCGQCTNLCSVNLATSFPSRAGKDI---Q-----VPSY--TSSEYRI-----DLGSSSR 83 6899*****************************************998877777663...1.....1111..2222222.....2222222 PP YABBY 97 sseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++kl++ + + + + v+rPP+kr r+Ps yn+fikeeiqrik +nPdi+hreafs+aaknWa fP+ihfgl Thecc1EG031868t1 84 CKNKLPKRATTVNTTPERvVNRPPDKRHRAPSLYNQFIKEEIQRIKLNNPDITHREAFSTAAKNWARFPHIHFGL 158 223333333332222222389**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	7.6E-62	8	158	IPR006780	YABBY protein
SuperFamily	SSF47095	1.7E-6	99	151	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MSSSNNSAPE QLCYIPCNLC NIILAVNVPC SSLFETVTVR CGQCTNLCSV NLATSFPSRA 60 GKDIQVPSYT SSEYRIDLGS SSRCKNKLPK RATTVNTTPE RVVNRPPDKR HRAPSLYNQF 120 IKEEIQRIKL NNPDITHREA FSTAAKNWAR FPHIHFGLML ETDNQPKLND DSTEHFQQLL 180 K*

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ526781	3e-45	HQ526781.1 Gossypium herbaceum clone NBRI_A_1939 simple sequence repeat marker, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017979558.1	1e-133	PREDICTED: axial regulator YABBY 5 isoform X1
Swissprot	Q8GW46	2e-76	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A061F7J4	1e-132	A0A061F7J4_THECC; Plant-specific transcription factor YABBY family protein isoform 1
STRING	EOY13320	1e-133	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5538	26	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	9e-79	YABBY family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG031868t1
Entrez Gene	18594238

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]